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A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data
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PubMed
title
A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data
(English)
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PubMed
main subject
statistics
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RNA sequencing
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inferred from title
RNA-Seq
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author name string
V. M. Kvam
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1
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P. Liu
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2
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Y. Si
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3
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language of work or name
English
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PubMed
publication date
February 2012
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PubMed
published in
American Journal of Botany
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PubMed
volume
99
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PubMed
issue
2
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page(s)
248-56
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cites work
Understanding mechanisms underlying human gene expression variation with RNA sequencing
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reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
retrieved
7 January 2021
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inferred from DOI database lookup
The developmental dynamics of the maize leaf transcriptome
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Mapping and quantifying mammalian transcriptomes by RNA-Seq
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Exploring plant transcriptomes using ultra high-throughput sequencing
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Moderated statistical tests for assessing differences in tag abundance
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Identifiability of isoform deconvolution from junction arrays and RNA-Seq.
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reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Improved statistical tests for differential gene expression by shrinking variance components estimates.
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Small-sample estimation of negative binomial dispersion, with applications to SAGE data
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Genome-wide mapping of alternative splicing in Arabidopsis thaliana
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7 January 2021
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Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Overdispersed logistic regression for SAGE: modelling multiple groups and covariates
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Bioconductor: open software development for computational biology and bioinformatics
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Differential expression analysis for sequence count data
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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From RNA-seq reads to differential expression results
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https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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A scaling normalization method for differential expression analysis of RNA-seq data
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Statistical Modeling of RNA-Seq Data.
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reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
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Crossref
reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Optimal Tests Shrinking Both Means and Variances Applicable to Microarray Data Analysis
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reference URL
https://api.crossref.org/works/10.3732%2FAJB.1100340
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7 January 2021
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Identifiers
DOI
10.3732/AJB.1100340
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
572227
OpenCitations bibliographic resource ID
572227
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
572227
PubMed publication ID
22268221
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stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
572227
ResearchGate publication ID
262039399
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