(Q37686910)

22 August 2017

1 reference

title

Exploring plant transcriptomes using ultra high-throughput sequencing (English)

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high-throughput sequencing

22 August 2017

0 references

1 reference

3

1 reference

22 August 2017

Lin Wang

1

1 reference

PubMed ID

20130067

22 August 2017

Pinghua Li

series ordinal

2

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22 August 2017

3 February 2010

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Briefings in functional genomics

22 August 2017

1 reference

22 August 2017

9

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22 August 2017

2

1 reference

22 August 2017

118-128

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Navigating gene expression using microarrays--a technology review

22 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Trends in microarray analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Serial analysis of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Comprehensive gene expression analysis by transcript profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Profiling a plant: expression analysis in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Genome-wide analysis of gene expression profiles during ear development of maize.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Microarray analysis of vegetative phase change in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Microarray analysis of the interaction between the aphid Rhopalosiphum padi and host plants reveals both differences and similarities between susceptible and partially resistant barley lines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

A pathway-specific microarray analysis highlights the complex and co-ordinated transcriptional networks of the developing grain of field-grown barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Gene expression analysis of light-modulated germination in tomato seeds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

A PCR-based platform for microRNA expression profiling studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Next-generation DNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Next-generation DNA sequencing techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Short-read sequencing technologies for transcriptional analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Single-molecule sequencing of an individual human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Quantification of the yeast transcriptome by single-molecule sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

SOAP: short oligonucleotide alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

PASS: a program to align short sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Using quality scores and longer reads improves accuracy of Solexa read mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Computational and analytical framework for small RNA profiling by high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Complementary DNA sequencing: expressed sequence tags and human genome project

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Big impacts by small RNAs in plant development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

A role for RNAi in the selective correction of DNA methylation defects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Roles of plant small RNAs in biotic stress responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Gene discovery and annotation using LCM-454 transcriptome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

mRNA-Seq whole-transcriptome analysis of a single cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Deep sequencing of the zebrafish transcriptome response to mycobacterium infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Genomewide comparative analysis of alternative splicing in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Structure and architecture of the maize genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Stem cell transcriptome profiling via massive-scale mRNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Statistical inferences for isoform expression in RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

21 January 2018

Direct RNA sequencing

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Genetic properties of the maize nested association mapping population

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Rapid whole-genome mutational profiling using next-generation sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

Transcript length bias in RNA-seq data confounds systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP057

21 January 2018

Identifiers

DOI

10.1093/BFGP/ELP057

1 reference

22 August 2017

1 reference

PubMed ID

20130067