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New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
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scholarly article
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PubMed
title
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
(English)
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PubMed
main subject
statistics
0 references
sequence alignment
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based on heuristic
inferred from title
author
Gesine Reinert
object named as
G. Reinert
series ordinal
3
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author name string
K. Song
series ordinal
1
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Crossref
J. Ren
series ordinal
2
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Crossref
M. Deng
series ordinal
4
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Crossref
M. S. Waterman
series ordinal
5
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Crossref
F. Sun
series ordinal
6
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Crossref
language of work or name
English
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PubMed
publication date
May 2014
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published in
Briefings in Bioinformatics
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PubMed
volume
15
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PubMed
issue
3
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PubMed
page(s)
343-53
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PubMed
cites work
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ChIP-seq accurately predicts tissue-specific activity of enhancers
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Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
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Comparison of metagenomic samples using sequence signatures
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Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms
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Normal and compound poisson approximations for pattern occurrences in NGS reads
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Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts
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28 September 2017
Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack.
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28 September 2017
Composition vector approach to whole-genome-based prokaryotic phylogeny: success and foundations
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28 September 2017
Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution
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28 September 2017
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Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method
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CVTree: a phylogenetic tree reconstruction tool based on whole genomes
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28 September 2017
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28 September 2017
Distributional regimes for the number of k-word matches between two random sequences
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28 September 2017
Genome-scale compositional comparisons in eukaryotes
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28 September 2017
A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base.
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28 September 2017
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28 September 2017
Compositional differences within and between eukaryotic genomes
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28 September 2017
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28 September 2017
Biological evaluation of d2, an algorithm for high-performance sequence comparison.
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28 September 2017
Dinucleotide relative abundance extremes: a genomic signature
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28 September 2017
A measure of the similarity of sets of sequences not requiring sequence alignment
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28 September 2017
Chaos game representation of gene structure
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28 September 2017
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28 September 2017
Alignment-free sequence comparison (II): theoretical power of comparison statistics
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31 May 2018
Markov chain analysis finds a significant influence of neighboring bases on the occurrence of a base in eucaryotic nuclear DNA sequences both protein-coding and noncoding.
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31 May 2018
A new distribution vector and its application in genome clustering.
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28 November 2018
Characterizing the D2 statistic: word matches in biological sequences
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28 November 2018
Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison
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28 November 2018
A statistical method for alignment-free comparison of regulatory sequences
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28 November 2018
Metrics for comparing regulatory sequences on the basis of pattern counts.
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28 November 2018
Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach
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28 November 2018
Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
1 reference
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28 November 2018
Variable length local decoding and alignment-free sequence comparison
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1093%2FBIB%2FBBT067
retrieved
7 January 2021
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inferred from DOI database lookup
Identifiers
DOI
10.1093/BIB/BBT067
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
183782
DBLP publication ID
journals/bib/SongRRDWS14
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
OpenCitations bibliographic resource ID
183782
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
183782
PMC publication ID
4017329
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
183782
PubMed publication ID
24064230
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
183782
ResearchGate publication ID
257071033
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