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The role of protein-bound water molecules in microbial rhodopsins
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title
The role of protein-bound water molecules in microbial rhodopsins
(English)
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stated in
PubMed
author
Erik Freier
object named as
Erik Freier
series ordinal
2
0 references
Steffen Wolf
object named as
Steffen Wolf
series ordinal
3
0 references
Klaus Gerwert
series ordinal
1
object named as
Klaus Gerwert
1 reference
stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
May 2014
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stated in
PubMed
published in
Biochimica et Biophysica Acta
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stated in
PubMed
volume
1837
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stated in
PubMed
issue
5
1 reference
stated in
PubMed
page(s)
606-13
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stated in
PubMed
cites work
Assigning protonation patterns in water networks in bacteriorhodopsin based on computed IR spectra
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The possible role of proton-coupled electron transfer (PCET) in water oxidation by photosystem II.
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Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode
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Theoretical Messenger Spectroscopy of Microsolvated Hydronium and Zundel Cations
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Spectral Signatures of the Pentagonal Water Cluster in Bacteriorhodopsin
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How Does a Membrane Protein Achieve a Vectorial Proton Transfer Via Water Molecules?
1 reference
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Electron diffraction analysis of structural changes in the photocycle of bacteriorhodopsin.
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Decoupling of photo- and proton cycle in the Asp85-->Glu mutant of bacteriorhodopsin.
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Chloride and proton transport in bacteriorhodopsin mutant D85T: different modes of ion translocation in a retinal protein.
1 reference
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Structure and hydration of the M-state of the bacteriorhodopsin mutant D96N studied by neutron diffraction
1 reference
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Structure of bacteriorhodopsin at 1.55 A resolution
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Coupling photoisomerization of retinal to directional transport in bacteriorhodopsin
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Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate
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An inward proton transport using Anabaena sensory rhodopsin.
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Kinetics and stoichiometry of light-induced proton release and uptake from purple membrane fragments, Halobacterium halobium cell envelopes, and phospholipid vesicles containing oriented purple membrane
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The Grotthuss mechanism
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Water molecules and exchangeable hydrogen ions at the active centre of bacteriorhodopsin localized by neutron diffraction. Elements of the proton pathway?
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Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin
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Computational studies of the early intermediates of the bacteriorhodopsin photocycle
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Coupling between catalytic sites and the proton channel in F1F0-type ATPases
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High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: new insights into the active site and the proton transfer pathways
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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Intramolecular proton transfer in channelrhodopsins
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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Kinetics of proton release and uptake by channelrhodopsin-2.
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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based on heuristic
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Crystal structure of the M intermediate of bacteriorhodopsin: allosteric structural changes mediated by sliding movement of a transmembrane helix
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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inferred from DOI database lookup
Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps.
1 reference
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Structural changes in the L photointermediate of bacteriorhodopsin
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A Transporter Converted into a Sensor, a Phototaxis Signaling Mutant of Bacteriorhodopsin at 3.0 Å
1 reference
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Optogenetics in neural systems
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7 January 2021
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inferred from DOI database lookup
Proton transfer reactions across bacteriorhodopsin and along the membrane
1 reference
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7 January 2021
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inferred from DOI database lookup
Role of internal water molecules in bacteriorhodopsin
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Unraveling photoexcited conformational changes of bacteriorhodopsin by time resolved electron paramagnetic resonance spectroscopy
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Time-resolved detection of transient movement of helices F and G in doubly spin-labeled bacteriorhodopsin
1 reference
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Crossref
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Proton transfer dynamics on the surface of the late M state of bacteriorhodopsin
1 reference
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Subsecond proton-hole propagation in bacteriorhodopsin
1 reference
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7 January 2021
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Dynamics of water molecules in the bacteriorhodopsin trimer in explicit lipid/water environment
1 reference
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7 January 2021
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Glutamic acid residues of bacteriorhodopsin at the extracellular surface as determinants for conformation and dynamics as revealed by site-directed solid-state 13C NMR.
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
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Electrostatic coupling between retinal isomerization and the ionization state of Glu-204: a general mechanism for proton release in bacteriorhodopsin
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Thermal motions in bacteriorhodopsin at different hydration levels studied by neutron scattering: correlation with kinetics and light-induced conformational changes
1 reference
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Crossref
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7 January 2021
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Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
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inferred from DOI database lookup
Crystallographic structure of the retinal and the protein after deprotonation of the Schiff base: the switch in the bacteriorhodopsin photocycle
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
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Crystallographic structures of the M and N intermediates of bacteriorhodopsin: assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy
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7 January 2021
based on heuristic
inferred from DOI database lookup
Moist and soft, dry and stiff: a review of neutron experiments on hydration-dynamics-activity relations in the purple membrane of Halobacterium salinarum
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein, lipid and water organization in bacteriorhodopsin crystals: a molecular view of the purple membrane at 1.9 A resolution
1 reference
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7 January 2021
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Effect of the arginine-82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release, and the photochemical cycle.
1 reference
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7 January 2021
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Pathways of proton release in the bacteriorhodopsin photocycle
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7 January 2021
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Role of water in bacteriorhodopsin's chromophore: resonance Raman study
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Light-driven protonation changes of internal aspartic acids of bacteriorhodopsin: an investigation by static and time-resolved infrared difference spectroscopy using [4-13C]aspartic acid labeled purple membrane
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Vibrational spectroscopy of bacteriorhodopsin mutants: light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212
1 reference
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7 January 2021
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Active internal waters in the bacteriorhodopsin photocycle. A comparative study of the L and M intermediates at room and cryogenic temperatures by infrared spectroscopy
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriorhodopsin's intramolecular proton-release pathway consists of a hydrogen-bonded network
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
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Functional roles of aspartic acid residues at the cytoplasmic surface of bacteriorhodopsin
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7 January 2021
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inferred from DOI database lookup
Fourier transform infrared spectra of a late intermediate of the bacteriorhodopsin photocycle suggest transient protonation of Asp-212.
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
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Water-splitting chemistry of photosystem II.
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Water Molecules in the Schiff Base Region of Bacteriorhodopsin
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Role of hydrogen-bond network in energy storage of bacteriorhodopsin's light-driven proton pump revealed by ab initio normal-mode analysis
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Proton storage site in bacteriorhodopsin: new insights from quantum mechanics/molecular mechanics simulations of microscopic pK(a) and infrared spectra
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Long-distance proton transfer with a break in the bacteriorhodopsin active site.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Infrared Difference Spectra of the Intermediates L, M, N, and O of the Bacteriorhodopsin Photoreaction Obtained by Time-Resolved Attenuated Total Reflection Spectroscopy
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Proton pump coupled to cytochrome c oxidase in mitochondria
1 reference
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https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Development of the signal in sensory rhodopsin and its transfer to the cognate transducer
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of the channelrhodopsin light-gated cation channel
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
A light-driven sodium ion pump in marine bacteria.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Rhodopsin-like protein from the purple membrane of Halobacterium halobium
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the Purple Membrane
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Optogenetics
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Strongly hydrogen-bonded water molecules in the Schiff base region of rhodopsins.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Proton binding within a membrane protein by a protonated water cluster
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structures and spectral signatures of protonated water networks in bacteriorhodopsin
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
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7 January 2021
based on heuristic
inferred from DOI database lookup
Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Amino acids with an intermolecular proton bond as proton storage site in bacteriorhodopsin
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Channelrhodopsin-2 is a leaky proton pump.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Proton transfer via a transient linear water-molecule chain in a membrane protein
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transient protonation changes in channelrhodopsin-2 and their relevance to channel gating
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reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
X-ray structure of sensory rhodopsin II at 2.1-A resolution
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Channelrhodopsin-2, a directly light-gated cation-selective membrane channel
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Role of aspartate-96 in proton translocation by bacteriorhodopsin.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Replacement of aspartic residues 85, 96, 115, or 212 affects the quantum yield and kinetics of proton release and uptake by bacteriorhodopsin.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Simultaneous monitoring of light-induced changes in protein side-group protonation, chromophore isomerization, and backbone motion of bacteriorhodopsin by time-resolved Fourier-transform infrared spectroscopy
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Electron diffraction studies of light-induced conformational changes in the Leu-93 --> Ala bacteriorhodopsin mutant.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Glutamic Acid 204 is the Terminal Proton Release Group at the Extracellular Surface of Bacteriorhodopsin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
In channelrhodopsin-2 Glu-90 is crucial for ion selectivity and is deprotonated during the photocycle
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Factors that differentiate the H-bond strengths of water near the Schiff bases in bacteriorhodopsin and Anabaena sensory rhodopsin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
pH dependence of the absorption spectra and photochemical transformations of the archaerhodopsins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Channelrhodopsin-1: a light-gated proton channel in green algae.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the rotor ring of F-Type Na+-ATPase from Ilyobacter tartaricus
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural biology. Nature's rotary electromotors
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Spectral signatures of hydrated proton vibrations in water clusters
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural changes in bacteriorhodopsin during ion transport at 2 angstrom resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the light-driven chloride pump halorhodopsin at 1.8 A resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conversion of Bacteriorhodopsin into a Chloride Ion Pump
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Proton-pumping mechanism of cytochrome C oxidase
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriorhodopsin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Water molecules and hydrogen-bonded networks in bacteriorhodopsin--molecular dynamics simulations of the ground state and the M-intermediate
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.BBABIO.2013.09.006
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/J.BBABIO.2013.09.006
0 references
PubMed publication ID
24055285
1 reference
stated in
PubMed
ResearchGate publication ID
256929021
0 references
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