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CTCF: an architectural protein bridging genome topology and function
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title
CTCF: an architectural protein bridging genome topology and function
(English)
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author
Chin-Tong Ong
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Chin-Tong Ong
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1
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author name string
Victor G. Corces
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2
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language of work or name
English
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publication date
April 2014
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published in
Nature Reviews Genetics
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volume
15
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PubMed
issue
4
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PubMed
page(s)
234-46
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PubMed
cites work
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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
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CTCF physically links cohesin to chromatin
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The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions
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Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
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CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease
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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
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Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
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A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene
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7 April 2017
The chromatin insulator CTCF and the emergence of metazoan diversity
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7 April 2017
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
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7 April 2017
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7 April 2017
The long-range interaction landscape of gene promoters
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7 April 2017
A map of the cis-regulatory sequences in the mouse genome
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PubMed Central
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7 April 2017
Spatial partitioning of the regulatory landscape of the X-inactivation centre
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7 April 2017
Cohesins functionally associate with CTCF on mammalian chromosome arms
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7 April 2017
Cohesin mediates transcriptional insulation by CCCTC-binding factor
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7 April 2017
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
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28 September 2017
Organization of the mitotic chromosome
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28 September 2017
Poly(ADP-ribosyl)ation regulates insulator function and intrachromosomal interactions in Drosophila
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28 September 2017
Genomic and proteomic analyses of Prdm5 reveal interactions with insulator binding proteins in embryonic stem cells
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28 September 2017
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
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28 September 2017
Jpx RNA activates Xist by evicting CTCF.
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28 September 2017
A genome-wide map of CTCF multivalency redefines the CTCF code
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28 September 2017
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
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28 September 2017
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming
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28 September 2017
CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice
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28 September 2017
Tcra gene recombination is supported by a Tcra enhancer- and CTCF-dependent chromatin hub.
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28 September 2017
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
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28 September 2017
Promoter-proximal CCCTC-factor binding is associated with an increase in the transcriptional pausing index
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28 September 2017
Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains
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28 September 2017
TFIIIC bound DNA elements in nuclear organization and insulation.
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28 September 2017
Nuclear organization and genome function
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28 September 2017
The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species
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28 September 2017
Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome
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28 September 2017
Nature and function of insulator protein binding sites in the Drosophila genome.
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28 September 2017
Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
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28 September 2017
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.
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28 September 2017
Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression
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28 September 2017
Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF.
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28 September 2017
Three-dimensional folding and functional organization principles of the Drosophila genome
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28 September 2017
Chromatin topology and the regulation of antigen receptor assembly
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28 September 2017
Identification of CTCF as a master regulator of the clustered protocadherin genes
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28 September 2017
Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development
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28 September 2017
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
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28 September 2017
Human tRNA genes function as chromatin insulators
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28 September 2017
ADP-ribose polymers localized on Ctcf-Parp1-Dnmt1 complex prevent methylation of Ctcf target sites
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28 September 2017
Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus
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28 September 2017
Regulation of chromatin organization and inducible gene expression by a Drosophila insulator
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28 September 2017
Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster
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28 September 2017
Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells
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28 September 2017
Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.
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28 September 2017
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
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28 September 2017
CTCF-mediated functional chromatin interactome in pluripotent cells
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28 September 2017
CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells
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28 September 2017
Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus
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28 September 2017
Specific sites in the C terminus of CTCF interact with the SA2 subunit of the cohesin complex and are required for cohesin-dependent insulation activity
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28 September 2017
Insulators, not Polycomb response elements, are required for long-range interactions between Polycomb targets in Drosophila melanogaster
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28 September 2017
Nicotinamide adenine dinucleotide (NAD)-regulated DNA methylation alters CCCTC-binding factor (CTCF)/cohesin binding and transcription at the BDNF locus
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28 September 2017
DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.
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28 September 2017
CTCF controls expression and chromatin architecture of the human major histocompatibility complex class II locus
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28 September 2017
Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells
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28 September 2017
Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors
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28 September 2017
Cell type specificity of chromatin organization mediated by CTCF and cohesin.
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28 September 2017
CTCF is a DNA methylation-sensitive positive regulator of the INK/ARF locus
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28 September 2017
Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus
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28 September 2017
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
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28 September 2017
Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary
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28 September 2017
CTCF and its protein partners: divide and rule?
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28 September 2017
CCCTC-binding factor activates PARP-1 affecting DNA methylation machinery.
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PubMed Central
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28 September 2017
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
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PubMed Central
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28 September 2017
USF1 recruits histone modification complexes and is critical for maintenance of a chromatin barrier
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PubMed Central
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28 September 2017
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.
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PubMed Central
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28 September 2017
Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.
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28 September 2017
Visualization of chromatin domains created by the gypsy insulator of Drosophila
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28 September 2017
Protein:protein interactions and the pairing of boundary elements in vivo
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PubMed Central
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28 September 2017
Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site
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28 September 2017
A position-effect assay for boundaries of higher order chromosomal domains
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PubMed Central
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28 September 2017
Cohesin-mediated interactions organize chromosomal domain architecture
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31 May 2018
The genomic landscape of cohesin-associated chromatin interactions
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31 May 2018
3C-based technologies to study the shape of the genome
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PubMed Central
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31 May 2018
CTCF-binding elements mediate control of V(D)J recombination
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PubMed Central
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31 May 2018
Antagonism between DNA hypermethylation and enhancer-blocking activity at the H19 DMD is uncovered by CpG mutations.
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21 January 2018
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
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Crossref
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21 January 2018
The CTCF insulator protein is posttranslationally modified by SUMO.
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Crossref
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21 January 2018
Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis
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Crossref
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21 January 2018
RNA interference machinery influences the nuclear organization of a chromatin insulator.
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Crossref
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21 January 2018
A wt1-controlled chromatin switching mechanism underpins tissue-specific wnt4 activation and repression
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Crossref
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21 January 2018
CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons
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Crossref
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21 January 2018
The DNA-Binding Protein CTCF Limits Proximal Vκ Recombination and Restricts κ Enhancer Interactions to the Immunoglobulin κ Light Chain Locus
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21 January 2018
A role for TFIIIC transcription factor complex in genome organization
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Crossref
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https://api.crossref.org/works/10.1038%2FNRG3663
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31 March 2020
Barrier function at HMR
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Crossref
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31 March 2020
Mapping of INS promoter interactions reveals its role in long-range regulation of SYT8 transcription
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Crossref
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31 March 2020
Identifiers
DOI
10.1038/NRG3663
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
725771
Dimensions Publication ID
1017831086
0 references
OpenCitations bibliographic resource ID
725771
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
725771
PMC publication ID
4610363
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
725771
PubMed publication ID
24614316
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
725771
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