(Q28249503)

5

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Sanjeev Shukla

object named as

Sanjeev Shukla

1

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Rickard Sandberg

object named as

Rickard Sandberg

8

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author name string

Ersen Kavak

2

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Melissa Gregory

3

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Mikhail Kashlev

6

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Philipp Oberdoerffer

7

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Shalini Oberdoerffer

Alternative isoform regulation in human tissue transcriptomes

9

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language of work or name

English

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publication date

3 November 2011

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published in

Nature

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volume

479

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page(s)

74-9

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issue

7371

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cites work

1 reference

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 January 2018

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Alternative splicing and disease

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Understanding alternative splicing: towards a cellular code

21 January 2018

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Pre-mRNA splicing: where and when in the nucleus

21 January 2018

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Building specificity with nonspecific RNA-binding proteins

21 January 2018

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A slow RNA polymerase II affects alternative splicing in vivo

21 January 2018

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Nucleosome positioning as a determinant of exon recognition.

21 January 2018

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Biased chromatin signatures around polyadenylation sites and exons

21 January 2018

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Nucleosomes are well positioned in exons and carry characteristic histone modifications

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Differential chromatin marking of introns and expressed exons by H3K36me3.

21 January 2018

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Chromatin organization marks exon-intron structure

21 January 2018

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Relationship between nucleosome positioning and DNA methylation

21 January 2018

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High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

21 January 2018

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Epigenetics in alternative pre-mRNA splicing

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Chromatin and Alternative Splicing

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CD45: an emerging role as a protein tyrosine phosphatase required for lymphocyte activation and development

21 January 2018

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CD45: a critical regulator of signaling thresholds in immune cells

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Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL

21 January 2018

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A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4.

21 January 2018

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Context-dependent regulatory mechanism of the splicing factor hnRNP L.

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Differential expression of CD45 isoforms is controlled by the combined activity of basal and inducible splicing-regulatory elements in each of the variable exons

21 January 2018

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CD45RB expression defines two interconvertible subsets of human CD4+ T cells with memory function.

21 January 2018

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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CTCF: master weaver of the genome

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CTCF shapes chromatin by multiple mechanisms: the impact of 20 years of CTCF research on understanding the workings of chromatin

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Regulation of alternative splicing by histone modifications

21 January 2018

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A wave of nascent transcription on activated human genes

21 January 2018

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Progression through the RNA polymerase II CTD cycle

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Engineering of elongation complexes of bacterial and yeast RNA polymerases.

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An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

21 January 2018

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Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci

21 January 2018

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

21 January 2018

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The honey bee epigenomes: differential methylation of brain DNA in queens and workers

21 January 2018

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High-resolution profiling of histone methylations in the human genome

21 January 2018

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

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Reciprocal intronic and exonic histone modification regions in humans.

21 January 2018

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Aberrant epigenetic landscape in cancer: how cellular identity goes awry

21 January 2018

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Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged

21 January 2018

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Loss of imprinting and cancer

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Methylated DNA immunoprecipitation (MeDIP).

21 January 2018

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Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation

21 January 2018

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Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS.

21 January 2018

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Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae.

21 January 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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Model-based analysis of ChIP-Seq (MACS)

21 January 2018

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TopHat: discovering splice junctions with RNA-Seq

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

21 January 2018

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SVDMAN--singular value decomposition analysis of microarray data.

21 January 2018

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Coupling transcription and alternative splicing.

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21964334