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The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes
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title
The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes
(English)
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PubMed
author
Eugene Koonin
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E. V. Koonin
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N. Yutin
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2
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English
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publication date
1 April 2014
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published in
Cold Spring Harbor Perspectives in Biology
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volume
6
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PubMed
issue
4
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PubMed
page(s)
a016188
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PubMed
cites work
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A korarchaeal genome reveals insights into the evolution of the Archaea
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A Role for the ESCRT System in Cell Division in Archaea
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7 April 2017
The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea
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7 April 2017
Supertrees disentangle the chimerical origin of eukaryotic genomes
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7 April 2017
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7 April 2017
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7 April 2017
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Multidimensional view of the bacterial cytoskeleton
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28 September 2017
From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell
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28 September 2017
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
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28 September 2017
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
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28 September 2017
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28 September 2017
Korarchaeota diversity, biogeography, and abundance in Yellowstone and Great Basin hot springs and ecological niche modeling based on machine learning
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28 September 2017
Archaeal origin of tubulin
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28 September 2017
Ubiquitin-like proteins
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28 September 2017
The natural history of ubiquitin and ubiquitin-related domains
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28 September 2017
New insights into the mechanisms of cytomotive actin and tubulin filaments
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28 September 2017
Spotlight on the Thaumarchaeota.
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28 September 2017
The archaeal 'TACK' superphylum and the origin of eukaryotes
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28 September 2017
First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat.
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28 September 2017
Cdv-based cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus
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28 September 2017
Phylogeny and evolution of the Archaea: one hundred genomes later
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28 September 2017
The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology
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28 September 2017
E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea
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28 September 2017
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.
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28 September 2017
The bacterial cytoskeleton.
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28 September 2017
Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis
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28 September 2017
Evolution of diverse cell division and vesicle formation systems in Archaea
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28 September 2017
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
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28 September 2017
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28 September 2017
Microbial phylogeny and diversity: small subunit ribosomal RNA sequence analysis and beyond.
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28 September 2017
Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii
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28 September 2017
Diversity and abundance of Korarchaeota in terrestrial hot springs of Iceland and Kamchatka.
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28 September 2017
Sculpting the bacterial cell
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28 September 2017
Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea
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28 September 2017
Ancient ESCRTs and the evolution of binary fission
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28 September 2017
Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements
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28 September 2017
Bacterial cell division: assembly, maintenance and disassembly of the Z ring
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28 September 2017
Identification of a crenarchaeal orthologue of Elf1: implications for chromatin and transcription in Archaea.
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28 September 2017
Search for a 'Tree of Life' in the thicket of the phylogenetic forest
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28 September 2017
Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model
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28 September 2017
Hydrogenosomes and mitosomes: conservation and evolution of functions
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28 September 2017
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28 September 2017
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28 September 2017
Predation and eukaryote cell origins: a coevolutionary perspective
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28 September 2017
Evolution of cytomotive filaments: the cytoskeleton from prokaryotes to eukaryotes.
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
The Argonaute protein family
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Role of Dicer in posttranscriptional RNA silencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and "Korarchaeota".
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Eukaryote evolution: engulfed by speculation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
The origin of mitochondria in light of a fluid prokaryotic chromosome model.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Slicer and the argonautes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Genomics and the irreducible nature of eukaryote cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Selective forces for the origin of the eukaryotic nucleus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Phylogenetic diversity and ecology of environmental Archaea
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Did DNA replication evolve twice independently?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Optimally recovering rate variation information from genomes and sequences: pattern filtering
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Cytoskeleton in the archaebacterium Thermoplasma acidophilum? Viscosity increase in soluble extracts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Evidence that eukaryotes and eocyte prokaryotes are immediate relatives
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Phylogenetic affinities between eukaryotic cells and a thermophilic mycoplasma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 September 2017
Predominant archaea in marine sediments degrade detrital proteins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
31 May 2018
An archaeal origin for the actin cytoskeleton: Implications for eukaryogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
31 May 2018
A tree of life based on protein domain organizations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
31 May 2018
The origin of eukaryotes is suggested as the symbiosis of pyrococcus into gamma-proteobacteria by phylogenetic tree based on gene content
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
31 May 2018
The effects of model choice and mitigating bias on the ribosomal tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
A congruent phylogenomic signal places eukaryotes within the Archaea.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Structure and Evolution of Ubiquitin and Ubiquitin-Related Domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Cell division and the ESCRT complex: A surprise from the archaea
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Ancestral lipid biosynthesis and early membrane evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Cell symbiosis [correction of symbioisis] theory: status and implications for the fossil record
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
A new aspect to the origin and evolution of eukaryotes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
Thermoreduction, a hypothesis for the origin of prokaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3970416
retrieved
28 November 2018
The evolution of eukaryotes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24691961
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24691961
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/CSHPERSPECT.A016188
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2187976
OpenCitations bibliographic resource ID
2187976
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2187976
PMCID
3970416
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2187976
PubMed ID
24691961
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2187976
ResearchGate publication ID
261293846
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