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Minireview: Conversing with chromatin: the language of nuclear receptors
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scholarly article
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stated in
PubMed
title
Minireview: Conversing with chromatin: the language of nuclear receptors
(English)
1 reference
stated in
PubMed
author
Simon C Biddie
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
author name string
Sam John
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
language of work or name
English
1 reference
stated in
PubMed
publication date
January 2014
1 reference
stated in
PubMed
published in
Molecular Endocrinology
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
volume
28
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
issue
1
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
page(s)
3-15
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
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28 September 2017
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Nucleosome-driven transcription factor binding and gene regulation
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28 September 2017
G9a functions as a molecular scaffold for assembly of transcriptional coactivators on a subset of glucocorticoid receptor target genes.
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PubMed Central
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28 September 2017
Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis
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28 September 2017
Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification
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PubMed Central
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28 September 2017
A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development
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28 September 2017
The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes
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28 September 2017
Rapid genome-scale mapping of chromatin accessibility in tissue
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28 September 2017
A new isoform of steroid receptor coactivator-1 is crucial for pathogenic progression of endometriosis
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28 September 2017
The Stat3/GR interaction code: predictive value of direct/indirect DNA recruitment for transcription outcome
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28 September 2017
Cell-type-specific control of enhancer activity by H3K9 trimethylation
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28 September 2017
Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
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28 September 2017
Analysis of chromatin dynamics during glucocorticoid receptor activation
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28 September 2017
O-GlcNAc transferase is involved in glucocorticoid receptor-mediated transrepression
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PubMed Central
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28 September 2017
Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome
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28 September 2017
Selective roles for cAMP response element-binding protein binding protein and p300 protein as coregulators for androgen-regulated gene expression in advanced prostate cancer cells
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28 September 2017
Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation
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28 September 2017
Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer.
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28 September 2017
Ligand-independent phosphorylation of the glucocorticoid receptor integrates cellular stress pathways with nuclear receptor signaling
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28 September 2017
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
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28 September 2017
esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function
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28 September 2017
Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes
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PubMed Central
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28 September 2017
Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
DNA methylation status predicts cell type-specific enhancer activity.
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28 September 2017
Methylation specifies distinct estrogen-induced binding site repertoires of CBP to chromatin
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PubMed Central
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28 September 2017
Analysis of the human endogenous coregulator complexome.
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28 September 2017
Determinants of nucleosome organization in primary human cells
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
The HSP90 molecular chaperone cycle regulates cyclical transcriptional dynamics of the glucocorticoid receptor and its coregulatory molecules CBP/p300 during ultradian ligand treatment
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Phosphorylation of Estrogen Receptor α at serine 118 directs recruitment of promoter complexes and gene-specific transcription
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Widespread negative response elements mediate direct repression by agonist-liganded glucocorticoid receptor
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
DNA binding alters coactivator interaction surfaces of the intact VDR-RXR complex
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Chromatin remodelling complex dosage modulates transcription factor function in heart development
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PubMed Central
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28 September 2017
Chromatin remodeling complex NURF regulates thymocyte maturation
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28 September 2017
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.
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28 September 2017
FOXA1 is a key determinant of estrogen receptor function and endocrine response
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
STAT6 transcription factor is a facilitator of the nuclear receptor PPARγ-regulated gene expression in macrophages and dendritic cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Loss of the tumor suppressor Snf5 leads to aberrant activation of the Hedgehog-Gli pathway.
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28 September 2017
Steroid receptor coactivator (SRC) family: masters of systems biology
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.
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28 September 2017
Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Human HDAC1 and HDAC2 function in the DNA-damage response to promote DNA nonhomologous end-joining
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Propagation of adipogenic signals through an epigenomic transition state.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Heritable individual-specific and allele-specific chromatin signatures in humans
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Variation in transcription factor binding among humans
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PubMed Central
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28 September 2017
Nucleosome dynamics define transcriptional enhancers
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Deconstructing repression: evolving models of co-repressor action
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28 September 2017
The homeodomain protein HOXB13 regulates the cellular response to androgens
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Combinatorial binding predicts spatio-temporal cis-regulatory activity
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28 September 2017
Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription.
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PubMed Central
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28 September 2017
Chd1 regulates open chromatin and pluripotency of embryonic stem cells
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28 September 2017
Coactivator function defines the active estrogen receptor alpha cistrome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
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PubMed Central
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28 September 2017
Interaction of the glucocorticoid receptor with the chromatin landscape
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PubMed Central
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28 September 2017
Transient cyclical methylation of promoter DNA.
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28 September 2017
Cyclical DNA methylation of a transcriptionally active promoter
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Role of Brg1 and HDAC2 in GR trans-repression of the pituitary POMC gene and misexpression in Cushing disease.
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28 September 2017
Single-cell analysis of glucocorticoid receptor action reveals that stochastic post-chromatin association mechanisms regulate ligand-specific transcription
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Histone H3 lysine 9 methyltransferase G9a is a transcriptional coactivator for nuclear receptors
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Steroid receptor coactivator-1-deficient mice exhibit altered hypothalamic-pituitary-adrenal axis function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
SWI/SNF complex is essential for NRSF-mediated suppression of neuronal genes in human nonsmall cell lung carcinoma cell lines
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
BAF57 governs androgen receptor action and androgen-dependent proliferation through SWI/SNF.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
Nucleosome arrays reveal the two-start organization of the chromatin fiber
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28 September 2017
Androgen-induced recruitment of RNA polymerase II to a nuclear receptor-p160 coactivator complex
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28 September 2017
Sequential recruitment of steroid receptor coactivator-1 (SRC-1) and p300 enhances progesterone receptor-dependent initiation and reinitiation of transcription from chromatin
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
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28 September 2017
DNA binding of the glucocorticoid receptor is not essential for survival
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28 September 2017
Cell-specific inhibitory and stimulatory effects of Fos and Jun on transcription activation by nuclear receptors
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28 September 2017
Circuitry and dynamics of human transcription factor regulatory networks
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31 May 2018
Genome-wide nucleosome specificity and directionality of chromatin remodelers.
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31 May 2018
A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism
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31 May 2018
Liver X receptor-retinoid X receptor (LXR-RXR) heterodimer cistrome reveals coordination of LXR and AP1 signaling in keratinocytes.
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31 May 2018
Densely interconnected transcriptional circuits control cell states in human hematopoiesis
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31 May 2018
Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages
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31 May 2018
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
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31 May 2018
Hormone-dependent coactivator binding to a hydrophobic cleft on nuclear receptors
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31 May 2018
The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus
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31 May 2018
Steroid receptor-mediated inhibition of rat prolactin gene expression does not require the receptor DNA-binding domain
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31 May 2018
Hormone-mediated repression: a negative glucocorticoid response element from the bovine prolactin gene
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31 May 2018
Functional antagonism between oncoprotein c-Jun and the glucocorticoid receptor
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
31 May 2018
Transcription factor interactions: selectors of positive or negative regulation from a single DNA element.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
31 May 2018
The coactivator SRC-1 is an essential coordinator of hepatic glucose production.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Tsix silences Xist through modification of chromatin structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Imprinting and the initiation of gene silencing in the germ line.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
An imprinting element from the mouse H19 locus functions as a silencer in Drosophila.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Induction of altered chromatin structures by simian virus 40 enhancer and promoter elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Sequence-specific binding of glucocorticoid receptor to MTV DNA at sites within and upstream of the transcribed region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
Reversible and persistent changes in chromatin structure accompany activation of a glucocorticoid-dependent enhancer element.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874455
retrieved
28 November 2018
A positive role for histone acetylation in transcription factor access to nucleosomal DNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24196351
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Many transcription factors interact synergistically with steroid receptors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24196351
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1210/MEND.2014.28.ISSUE-11.TOC
0 references
10.1210/ME.2013-1247
1 reference
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
PMC publication ID
3874455
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
PubMed publication ID
24196351
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3874455
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24196351%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 June 2020
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