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Mechanisms of deadenylation-dependent decay
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title
Mechanisms of deadenylation-dependent decay
(English)
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PubMed
author name string
Chyi-Ying A. Chen
series ordinal
1
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Ann-Bin Shyu
series ordinal
2
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language of work or name
English
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PubMed
publication date
2011
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published in
Wiley interdisciplinary reviews. RNA
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PubMed
volume
2
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PubMed
page(s)
167-83
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PubMed
issue
2
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PubMed
cites work
Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation
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SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells
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7 April 2017
Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex
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7 April 2017
Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
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7 April 2017
Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation
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PubMed Central
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7 April 2017
mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
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PubMed Central
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Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
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7 April 2017
AU-rich elements and associated factors: are there unifying principles?
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7 April 2017
Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping
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PubMed Central
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7 April 2017
Identification of novel argonaute-associated proteins
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7 April 2017
A role for the P-body component GW182 in microRNA function
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7 April 2017
A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing
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7 April 2017
UNR, a new partner of poly(A)-binding protein, plays a key role in translationally coupled mRNA turnover mediated by the c-fos major coding-region determinant
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7 April 2017
Cytoplasmic foci are sites of mRNA decay in human cells
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PubMed Central
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7 April 2017
Identification of a human cytoplasmic poly(A) nuclease complex stimulated by poly(A)-binding protein
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PubMed Central
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7 April 2017
Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression
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PubMed Central
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7 April 2017
Y14 and hUpf3b form an NMD-activating complex
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PubMed Central
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7 April 2017
The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci
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Regulation of c-myc mRNA decay by translational pausing in a coding region instability determinant
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7 April 2017
A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles
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7 April 2017
CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase
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PubMed Central
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7 April 2017
Identification of four families of yCCR4- and Mg2+-dependent endonuclease-related proteins in higher eukaryotes, and characterization of orthologs of yCCR4 with a conserved leucine-rich repeat essential for hCAF1/hPOP2 binding
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7 April 2017
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
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7 April 2017
Exoribonuclease superfamilies: structural analysis and phylogenetic distribution
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7 April 2017
Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
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PubMed Central
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7 April 2017
Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions
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7 April 2017
The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases
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7 April 2017
AU-rich elements target small nuclear RNAs as well as mRNAs for rapid degradation
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7 April 2017
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
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7 April 2017
The functions of animal microRNAs
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7 April 2017
Argonaute2 is the catalytic engine of mammalian RNAi
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7 April 2017
Role for a bidentate ribonuclease in the initiation step of RNA interference
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7 April 2017
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
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7 April 2017
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation
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Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies
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7 April 2017
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
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7 April 2017
Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae
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7 April 2017
The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae
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7 April 2017
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
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7 April 2017
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases
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7 April 2017
PAN3 encodes a subunit of the Pab1p-dependent poly(A) nuclease in Saccharomyces cerevisiae
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7 April 2017
The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity
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7 April 2017
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7 April 2017
A mechanism for translationally coupled mRNA turnover: interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex
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7 April 2017
The highways and byways of mRNA decay
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7 April 2017
P bodies: at the crossroads of post-transcriptional pathways
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7 April 2017
Disruption of GW bodies impairs mammalian RNA interference
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7 April 2017
Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover
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7 April 2017
Messenger RNA turnover in eukaryotes: pathways and enzymes
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Control of c-myc mRNA half-life in vitro by a protein capable of binding to a coding region stability determinant
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7 April 2017
Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells
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7 April 2017
Rapid deadenylation triggered by a nonsense codon precedes decay of the RNA body in a mammalian cytoplasmic nonsense-mediated decay pathway
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7 April 2017
microRNA functions
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7 April 2017
P bodies and the control of mRNA translation and degradation
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7 April 2017
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
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7 April 2017
AU-rich elements: characterization and importance in mRNA degradation
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7 April 2017
The many pathways of RNA degradation
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7 April 2017
MicroRNAs direct rapid deadenylation of mRNA
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7 April 2017
From birth to death: the complex lives of eukaryotic mRNAs
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7 April 2017
Molecular mechanisms of translational control
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7 April 2017
Eukaryotic mRNA decapping
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7 April 2017
The enzymes and control of eukaryotic mRNA turnover
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7 April 2017
Argonaute2, a link between genetic and biochemical analyses of RNAi
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7 April 2017
The cap-to-tail guide to mRNA turnover
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7 April 2017
A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance
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7 April 2017
Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells
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7 April 2017
A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation
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7 April 2017
Premature translational termination triggers mRNA decapping
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7 April 2017
Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript
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7 April 2017
Stimulation of 3T3 cells induces transcription of the c-fos proto-oncogene
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7 April 2017
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Degradation of mRNA in eukaryotes
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7 April 2017
Ago-TNRC6 triggers microRNA-mediated decay by promoting two deadenylation steps
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BTG/TOB factors impact deadenylases
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Execution of nonsense-mediated mRNA decay: what defines a substrate?
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28 September 2017
The control of mRNA decapping and P-body formation.
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28 September 2017
Translational control of localized mRNAs: restricting protein synthesis in space and time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Computational analysis of miRNA-mediated repression of translation: implications for models of translation initiation inhibition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Messenger RNA regulation: to translate or to degrade
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Mammalian stress granules and processing bodies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
MicroRNAs silence gene expression by repressing protein expression and/or by promoting mRNA decay.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
How do microRNAs regulate gene expression?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
ARE-mRNA degradation requires the 5'-3' decay pathway.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Decapping the message: a beginning or an end.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
'Cap-tabolism'.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Positive and negative regulation of poly(A) nuclease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Regulation of local mRNA translation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Premature termination codons enhance mRNA decapping in human cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
An mRNA surveillance mechanism that eliminates transcripts lacking termination codons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Unraveling a cytoplasmic role for hnRNP D in the in vivo mRNA destabilization directed by the AU-rich element
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Nonsense mutations in the alcohol dehydrogenase gene of Drosophila melanogaster correlate with an abnormal 3' end processing of the corresponding pre-mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
A broader role for AU-rich element-mediated mRNA turnover revealed by a new transcriptional pulse strategy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Modulation of the fate of cytoplasmic mRNA by AU-rich elements: key sequence features controlling mRNA deadenylation and decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Premature nonsense codons decrease the stability of phytohemagglutinin mRNA in a position-dependent manner
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
The half-life of c-myc mRNA in growing and serum-stimulated cells: influence of the coding and 3' untranslated regions and role of ribosome translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Control of gene activity in higher eukaryotic cells by prokaryotic regulatory elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
AUUUA is not sufficient to promote poly(A) shortening and degradation of an mRNA: the functional sequence within AU-rich elements may be UUAUUUA(U/A)(U/A).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
mRNA decay mediated by two distinct AU-rich elements from c-fos and granulocyte-macrophage colony-stimulating factor transcripts: different deadenylation kinetics and uncoupling from translation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
The Role of the Poly(A) Sequence in Mammalian Messenger RN
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
An Adenylic Acid-Rich Sequence in Messenger RNA of HeLa Cells and Its Possible Relationship to Reiterated Sites in DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
A new kind of informational suppression in the nematode Caenorhabditis elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Interference of nonsense mutations with eukaryotic messenger RNA stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
The protein-coding region of c-myc mRNA contains a sequence that specifies rapid mRNA turnover and induction by protein synthesis inhibitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
28 September 2017
Transcriptional pulsing approaches for analysis of mRNA turnover in mammalian cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Binary specification of nonsense codons by splicing and cytoplasmic translation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Life and death in the cytoplasm: messages from the 3' end.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Multiple elements in the c-fos protein-coding region facilitate mRNA deadenylation and decay by a mechanism coupled to translation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Selective degradation of early-response-gene mRNAs: functional analyses of sequence features of the AU-rich elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Interplay of two functionally and structurally distinct domains of the c-fos AU-rich element specifies its mRNA-destabilizing function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Removal of poly(A) and consequent degradation of c-fos mRNA facilitated by 3' AU-rich sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Transient accumulation of c-fos RNA following serum stimulation requires a conserved 5' element and c-fos 3' sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Two distinct destabilizing elements in the c-fos message trigger deadenylation as a first step in rapid mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624885
retrieved
31 May 2018
Multi-level response of the yeast genome to glucose
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FWRNA.40
retrieved
21 January 2018
Computational modeling and experimental analysis of nonsense-mediated decay in yeast
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FWRNA.40
retrieved
21 January 2018
EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FWRNA.40
retrieved
21 January 2018
Adenine-rich Polymer associated with Rabbit Reticulocyte Messenger RNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FWRNA.40
retrieved
21 January 2018
Unstable β-globin mRNA in mRNA-deficient β0 thalassemia
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21957004
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Multifunctional deadenylase complexes diversify mRNA control
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21957004
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The c-fos transcript is targeted for rapid decay by two distinct mRNA degradation pathways
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21957004
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mechanisms of mRNA degradation in eukaryotes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21957004
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Decapping the message: a beginning or an end
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21957004
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1002/WRNA.40
0 references
PMCID
3624885
1 reference
stated in
PubMed
PubMed ID
21957004
1 reference
stated in
PubMed
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