(Q26852357)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Elucidating gene function and function evolution through comparison of co-expression networks of plants (English)

2 references

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16 February 2020

1

1 reference

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16 February 2020

Neha Vaid

2

1 reference

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16 February 2020

author name string

Magdalena Musialak-Lange

3

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Marcin Janowski

4

2 references

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16 February 2020

Marek Mutwil

5

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

language of work or name

1 reference

19 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Plant Science

16 February 2020

published in

2 references

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16 February 2020

volume

5

2 references

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16 February 2020

page(s)

394

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

A large-scale evaluation of computational protein function prediction

16 February 2020

cites work

1 reference

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The cellulose synthase superfamily in fully sequenced plants and algae

7 April 2017

1 reference

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Network-based prediction of protein function

7 April 2017

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Gene ontology: tool for the unification of biology

7 April 2017

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Cluster analysis and display of genome-wide expression patterns

7 April 2017

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The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant

7 April 2017

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Genomic Clues to the Ancestral Flowering Plant

7 April 2017

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7 April 2017

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A gene-coexpression network for global discovery of conserved genetic modules

7 April 2017

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Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets

7 April 2017

1 reference

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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

9 May 2017

1 reference

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The cell biology of cellulose synthesis

9 May 2017

1 reference

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Towards revealing the functions of all genes in plants

28 September 2017

1 reference

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Data integration through proximity-based networks provides biological principles of organization across scales

28 September 2017

1 reference

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The origin of the plant body axis

28 September 2017

1 reference

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Moss cell walls: structure and biosynthesis

28 September 2017

1 reference

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Co-expression analysis identifies CRC and AP1 the regulator of Arabidopsis fatty acid biosynthesis

28 September 2017

1 reference

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The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Comparative co-expression analysis in plant biology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

PlaNet: combined sequence and expression comparisons across plant networks derived from seven species

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Prephenate aminotransferase directs plant phenylalanine biosynthesis via arogenate.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Genome-wide computational function prediction of Arabidopsis proteins by integration of multiple data sources

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Network-based function prediction and interactomics: the case for metabolic enzymes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Identification of a cellulose synthase-associated protein required for cellulose biosynthesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Arabidopsis - a powerful model system for plant cell wall research

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

CoP: a database for characterizing co-expressed gene modules with biological information in plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

28 September 2017

1 reference

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STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data

28 September 2017

1 reference

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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

28 September 2017

1 reference

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Selaginella and 400 million years of separation

28 September 2017

1 reference

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Laying down the bricks: logistic aspects of cell wall biosynthesis

28 September 2017

1 reference

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A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers

28 September 2017

1 reference

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Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

28 September 2017

1 reference

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GeneCAT--novel webtools that combine BLAST and co-expression analyses.

28 September 2017

1 reference

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Organization of cellulose synthase complexes involved in primary cell wall synthesis in Arabidopsis thaliana

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

A gene from the cellulose synthase-like C family encodes a beta-1,4 glucan synthase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Biosynthesis of plant cell wall polysaccharides - a complex process.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Cellulose synthesis in higher plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Visualization of cellulose synthase demonstrates functional association with microtubules.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patens

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Computational cluster validation in post-genomic data analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

The unicellular ancestry of animal development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Large-scale co-expression approach to dissect secondary cell wall formation across plant species

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Involvement of TBL/DUF231 proteins into cell wall biology

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4137175

Green genes-comparative genomics of the green branch of life.

31 May 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Silencing of hydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyltransferase affects phenylpropanoid biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Identification of Arabidopsis BAK1-associating receptor-like kinase 1 (BARK1) and characterization of its gene expression and brassinosteroid-regulated root phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

QUASIMODO1 is expressed in vascular tissue of Arabidopsis thaliana inflorescence stems, and affects homogalacturonan and xylan biosynthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

The origins of multicellularity: a multi-taxon genome initiative.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Isolation and characterization of a novel peroxidase gene ZPO-C whose expression and function are closely associated with lignification during tracheary element differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

The Arabidopsis sku6/spiral1 gene encodes a plus end-localized microtubule-interacting protein involved in directional cell expansion

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

The irregular xylem 2 mutant is an allele of korrigan that affects the secondary cell wall of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Dissecting plant genomes with the PLAZA comparative genomics platform

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

14-3-3 proteins are constituents of the insoluble glycoprotein framework of the chlamydomonas cell wall

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

POM-POM2/cellulose synthase interacting1 is essential for the functional association of cellulose synthase and microtubules in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Chitinase-like1/pom-pom1 and its homolog CTL2 are glucan-interacting proteins important for cellulose biosynthesis in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00394

Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-o-methylation of glucuronic acid on xylan

21 January 2018

1 reference

12 December 2020

Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall

1 reference

12 December 2020

Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics

1 reference

12 December 2020

1 reference

12 December 2020

Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis

1 reference

12 December 2020

Identifiers

DOI

10.3389/FPLS.2014.00394

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

25191328

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25191328%20AND%20SRC:MED&resulttype=core&format=json