(Q38001459)

26 August 2017

Comparative co-expression analysis in plant biology (English)

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26 August 2017

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2

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26 August 2017

4

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26 August 2017

Sara Movahedi

1

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PubMed ID

22489681

26 August 2017

Ken S Heyndrickx

series ordinal

3

1 reference

26 August 2017

10 May 2012

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Plant, Cell and Environment

26 August 2017

1 reference

26 August 2017

35

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26 August 2017

10

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26 August 2017

1787-1798

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Gene expression omnibus: microarray data storage, submission, retrieval, and analysis

26 August 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Clustering gene expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A gene expression atlas of the model legume Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Accurate quantification of functional analogy among close homologs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

How does gene expression clustering work?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

CORNET: a user-friendly tool for data mining and integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

TobEA: an atlas of tobacco gene expression from seed to senescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Meta Analysis of Gene Expression Data within and Across Species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Utilizing tiling microarrays for whole-genome analysis in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Microarray platforms--comparisons and contrasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A regulon conserved in monocot and dicot plants defines a functional module in antifungal plant immunity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

KEGG for representation and analysis of molecular networks involving diseases and drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Orthologs, paralogs, and evolutionary genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

The quest for orthologs: finding the corresponding gene across genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

WGCNA: an R package for weighted correlation network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Cross species analysis of microarray expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A microarray analysis of the rice transcriptome and its comparison to Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Plant protein-coding gene families: emerging bioinformatics approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

PlaNet: combined sequence and expression comparisons across plant networks derived from seven species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

CoP: a database for characterizing co-expressed gene modules with biological information in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

PLAZA: a comparative genomics resource to study gene and genome evolution in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Microarray data normalization and transformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Database resources of the National Center for Biotechnology Information

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A gene expression map of Arabidopsis thaliana development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Cytoscape 2.8: new features for data integration and network visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A cross-species transcriptomics approach to identify genes involved in leaf development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

The MCM-binding protein ETG1 aids sister chromatid cohesion required for postreplicative homologous recombination repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Differential expression in RNA-seq: a matter of depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Comparative biology: beyond sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Arabidopsis reactome: a foundation knowledgebase for plant systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Dissecting plant genomes with the PLAZA comparative genomics platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

The flowering world: a tale of duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Hydrogen peroxide-induced gene expression across kingdoms: a comparative analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Exploring the plant transcriptome through phylogenetic profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Genome-wide identification of potential plant E2F target genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

A dynamic gene expression atlas covering the entire life cycle of rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

Survey of clustering algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

MIAME/Plant - adding value to plant microarrray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

An atlas of gene expression from seed to seed through barley development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-3040.2012.02517.X

10.1111/J.1365-3040.2012.02517.X

21 January 2018

Identifiers

DOI

1 reference

26 August 2017

1 reference

PubMed ID

22489681