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Quality assurance of RNA expression profiling in clinical laboratories
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PubMed
title
Quality assurance of RNA expression profiling in clinical laboratories
(English)
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PubMed
author
Zhiyuan Hu
object named as
Zhiyuan Hu
series ordinal
2
0 references
author name string
Weihua Tang
series ordinal
1
1 reference
stated in
Crossref
Hind Muallem
series ordinal
3
1 reference
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Crossref
Margaret L. Gulley
series ordinal
4
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stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
January 2012
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stated in
PubMed
published in
The Journal of Molecular Diagnostics
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stated in
PubMed
volume
14
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stated in
PubMed
issue
1
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PubMed
page(s)
1-11
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PubMed
cites work
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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
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Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue
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28 September 2017
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28 September 2017
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28 September 2017
Tissue handling for genome-wide expression analysis: a review of the issues, evidence, and opportunities
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28 September 2017
Dissection of a metastatic gene expression signature into distinct components
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28 September 2017
In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays
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28 September 2017
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Precision profiling and components of variability analysis for Affymetrix microarray assays run in a clinical context
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28 September 2017
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31 May 2018
Effect of long-term storage in TRIzol on microarray-based gene expression profiling
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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31 May 2018
College of American Pathologists/American College of Medical Genetics proficiency testing for constitutional cytogenomic microarray analysis
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Analysis of circulating microRNA: preanalytical and analytical challenges.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Does routine repeat testing of critical values offer any advantage over single testing?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Gene expression profiling of tissues and cell lines: a dual-color microarray method.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
retrieved
28 November 2018
Orientation and expression of methicillin-resistant Staphylococcus aureus small RNAs by direct multiplexed measurements using the nCounter of NanoString technology
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Biobanking of fresh frozen tissue from clinical surgical specimens: transport logistics, sample selection, and histologic characterization.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Microarrays in the clinic
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
mRNA and microRNA quality control for RT-qPCR analysis.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Diagnostic error in medicine: analysis of 583 physician-reported errors
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Error tracking in a clinical biochemistry laboratory.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Daily clinical practice of fresh tumour tissue freezing and gene expression profiling; logistics pilot study preceding the MINDACT trial.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Assessment of sample collection and storage methods for multicenter immunologic research in children
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Taking gene-expression profiling to the clinic: when will molecular signatures become relevant to patient care?
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Clinical laboratory reports in molecular pathology
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
retrieved
28 November 2018
European Organisation for Research and Treatment of Cancer (EORTC) Pathobiology Group standard operating procedure for the preparation of human tumour tissue extracts suited for the quantitative analysis of tissue-associated biomarkers.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
A highly standardized, robust, and cost-effective method for genome-wide transcriptome analysis of peripheral blood applicable to large-scale clinical trials
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Assessment of fixatives, fixation, and tissue processing on morphology and RNA integrity
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Optimized blood cell profiling method for genomic biomarker discovery using high-density microarray.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Use of within-array replicate spots for assessing differential expression in microarray experiments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Expression profiling--best practices for data generation and interpretation in clinical trials
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Effect of duration of fixation on quantitative reverse transcription polymerase chain reaction analyses
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338342
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28 November 2018
Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Responding to large-scale testing errors
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Fresh frozen tissue: RNA extraction and quality control
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Statistical methods for identifying differentially expressed gene combinations
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Selection and validation of normalization methods for c-DNA microarrays using within-array replications
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Tissue Banking of Diagnostic Lung Cancer Biopsies for Extraction of High Quality RNA
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
RNA quality and gene expression analysis of ovarian tumor tissue undergoing repeated thaw-freezing
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Transcriptional profiling of oral squamous cell carcinoma using formalin-fixed paraffin-embedded samples
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Gene expression profiling of minimal residual disease in acute myeloid leukaemia by novel multiplex-PCR-based method
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Risk management: correct patient and specimen identification in a surgical pathology laboratory. The experience of Infermi Hospital, Rimini, Italy
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Consensus guidelines for microarray gene expression analyses in leukemia from three European leukemia networks
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/22020152
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Comparison of cryopreservation and standard needle biopsy for gene expression profiling of human breast cancer specimens
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22020152
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22020152
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.JMOLDX.2011.09.003
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4818360
OpenCitations bibliographic resource ID
4818360
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4818360
PMCID
3338342
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4818360
PubMed ID
22020152
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4818360
ResearchGate publication ID
51735668
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