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Frameshifting dynamics
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stated in
PubMed
title
Frameshifting dynamics
(English)
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author name string
Ignacio Tinoco
series ordinal
1
1 reference
stated in
Crossref
Hee-Kyung Kim
series ordinal
2
1 reference
stated in
Crossref
Shannon Yan
series ordinal
3
1 reference
stated in
Crossref
language of work or name
English
1 reference
stated in
PubMed
publication date
December 2013
1 reference
stated in
PubMed
published in
Biopolymers
1 reference
stated in
PubMed
volume
99
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stated in
PubMed
issue
12
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stated in
PubMed
page(s)
1147-66
1 reference
stated in
PubMed
cites work
Structural basis for protein synthesis: snapshots of the ribosome in motion
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PubMed Central
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Single-molecule analysis of translational dynamics
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21 March 2017
Mechanisms and implications of programmed translational frameshifting
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21 March 2017
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
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PubMed Central
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21 March 2017
Frameshifting RNA pseudoknots: structure and mechanism
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PubMed Central
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21 March 2017
The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift
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PubMed Central
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21 March 2017
Function of the ribosomal E-site: a mutagenesis study
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21 March 2017
Improvement of reading frame maintenance is a common function for several tRNA modifications
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21 March 2017
The complex of tmRNA-SmpB and EF-G on translocating ribosomes
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21 March 2017
Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome
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PubMed Central
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21 March 2017
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
1 reference
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PubMed Central
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21 March 2017
The Mechanism for Activation of GTP Hydrolysis on the Ribosome
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PubMed Central
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21 March 2017
Structural aspects of messenger RNA reading frame maintenance by the ribosome
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21 March 2017
The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State
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21 March 2017
Structures of the ribosome in intermediate states of ratcheting
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PubMed Central
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21 March 2017
Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome
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PubMed Central
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21 March 2017
A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction
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PubMed Central
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21 March 2017
Locking and unlocking of ribosomal motions
1 reference
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PubMed Central
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21 March 2017
Crystal structure of the ribosome at 5.5 A resolution
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PubMed Central
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21 March 2017
Structure of the 70S ribosome complexed with mRNA and tRNA
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PubMed Central
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21 March 2017
Structures of the bacterial ribosome at 3.5 A resolution
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PubMed Central
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21 March 2017
The ribosome as a molecular machine: the mechanism of tRNA-mRNA movement in translocation
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PubMed Central
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21 March 2017
A ribosomal misincorporation of Lys for Arg in human triosephosphate isomerase expressed in Escherichia coli gives rise to two protein populations
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PubMed Central
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21 March 2017
Coordinated conformational and compositional dynamics drive ribosome translocation
1 reference
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PubMed Central
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28 September 2017
Dynamics of translation by single ribosomes through mRNA secondary structures
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PubMed Central
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28 September 2017
Rotation of the head of the 30S ribosomal subunit during mRNA translocation
1 reference
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PubMed Central
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28 September 2017
Unraveling the dynamics of ribosome translocation
1 reference
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PubMed Central
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28 September 2017
One core, two shells: bacterial and eukaryotic ribosomes.
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PubMed Central
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28 September 2017
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
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PubMed Central
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28 September 2017
Further in vitro exploration fails to support the allosteric three-site model
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PubMed Central
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28 September 2017
In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis
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PubMed Central
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28 September 2017
Insights into the molecular determinants of EF-G catalyzed translocation.
1 reference
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PubMed Central
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28 September 2017
Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis
1 reference
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PubMed Central
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28 September 2017
The ribosome uses two active mechanisms to unwind messenger RNA during translation
1 reference
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PubMed Central
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28 September 2017
Ultrahigh-resolution optical trap with single-fluorophore sensitivity
1 reference
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PubMed Central
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28 September 2017
Dynamics of the translational machinery
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PubMed Central
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28 September 2017
Correlated conformational events in EF-G and the ribosome regulate translocation
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PubMed Central
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28 September 2017
Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.
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PubMed Central
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28 September 2017
Structure and dynamics of a processive Brownian motor: the translating ribosome
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28 September 2017
Single ribosome dynamics and the mechanism of translation
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PubMed Central
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28 September 2017
Hungry codons promote frameshifting in human mitochondrial ribosomes
1 reference
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PubMed Central
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28 September 2017
Spontaneous formation of the unlocked state of the ribosome is a multistep process
1 reference
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PubMed Central
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28 September 2017
What recent ribosome structures have revealed about the mechanism of translation
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28 September 2017
The evolutionary consequences of erroneous protein synthesis.
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28 September 2017
Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation
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28 September 2017
A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment
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28 September 2017
Single-molecule observations of ribosome function
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28 September 2017
Following movement of the L1 stalk between three functional states in single ribosomes.
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28 September 2017
Translation at the single-molecule level
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28 September 2017
Following translation by single ribosomes one codon at a time.
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PubMed Central
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28 September 2017
The process of mRNA-tRNA translocation
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PubMed Central
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28 September 2017
Messenger RNA conformations in the ribosomal E site revealed by X-ray crystallography.
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28 September 2017
The role of fluctuations in tRNA selection by the ribosome
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28 September 2017
Fluctuations of transfer RNAs between classical and hybrid states
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28 September 2017
Genetic analysis of the E site during RF2 programmed frameshifting
1 reference
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28 September 2017
Intersubunit movement is required for ribosomal translocation.
1 reference
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PubMed Central
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28 September 2017
Identification of two distinct hybrid state intermediates on the ribosome
1 reference
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PubMed Central
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28 September 2017
Structural basis for messenger RNA movement on the ribosome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
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28 September 2017
The hybrid state of tRNA binding is an authentic translation elongation intermediate
1 reference
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PubMed Central
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28 September 2017
Structural insights into translational fidelity
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PubMed Central
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28 September 2017
Recognition and selection of tRNA in translation
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PubMed Central
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28 September 2017
tRNA dynamics on the ribosome during translation
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
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28 September 2017
Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting
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28 September 2017
The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting
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28 September 2017
The effect of force on thermodynamics and kinetics of single molecule reactions
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28 September 2017
Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
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28 September 2017
Ribosomal pausing during translation of an RNA pseudoknot
1 reference
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28 September 2017
The function of a ribosomal frameshifting signal from human immunodeficiency virus-1 in Escherichia coli
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28 September 2017
Prokaryotic ribosomes recode the HIV-1 gag-pol-1 frameshift sequence by an E/P site post-translocation simultaneous slippage mechanism
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PubMed Central
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28 September 2017
Ribosomal frameshifting viral RNAs.
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28 September 2017
Ribosome gymnastics--degree of difficulty 9.5, style 10.0.
1 reference
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PubMed Central
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28 September 2017
Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame
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PubMed Central
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28 September 2017
Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
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28 September 2017
Spontaneous intersubunit rotation in single ribosomes.
1 reference
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PubMed Central
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28 September 2017
Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics
1 reference
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PubMed Central
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31 May 2018
Single-molecule fluorescence measurements of ribosomal translocation dynamics.
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31 May 2018
mRNA translocation occurs during the second step of ribosomal intersubunit rotation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
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31 May 2018
Following the intersubunit conformation of the ribosome during translation in real time
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
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31 May 2018
Real-time tRNA transit on single translating ribosomes at codon resolution
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31 May 2018
Discovery and investigation of misincorporation of serine at asparagine positions in recombinant proteins expressed in Chinese hamster ovary cells
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PubMed Central
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31 May 2018
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Frameshift events associated with the lysyl-tRNA and the rare arginine codon, AGA, in Escherichia coli: a case study involving the human Relaxin 2 protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
A reassessment of the response of the bacterial ribosome to the frameshift stimulatory signal of the human immunodeficiency virus type 1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Characterization of ribosomal frameshifting in HIV-1 gag-pol expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Expression of a coronavirus ribosomal frameshift signal in Escherichia coli: influence of tRNA anticodon modification on frameshifting.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
31 May 2018
Problems with the Analyses of the Ribosomal Allosteric Three-site Model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
Control of misincorporation of serine for asparagine during antibody production using CHO cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
tRNA selection and kinetic proofreading in translation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
Initial binding of the elongation factor Tu.GTP.aminoacyl-tRNA complex preceding codon recognition on the ribosome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4011568
retrieved
28 November 2018
An ‘integrated model’ of programmed ribosomal frameshifting
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23722586
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23722586
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Programmed translational frameshifting
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23722586
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23722586
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23722586
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1002/BIP.22293
0 references
PMC publication ID
4011568
1 reference
stated in
PubMed
PubMed publication ID
23722586
1 reference
stated in
PubMed
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