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Chromatin and epigenetic regulation of pre-mRNA processing
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title
Chromatin and epigenetic regulation of pre-mRNA processing
(English)
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author name string
S. J. Brown
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1
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P. Stoilov
series ordinal
2
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Y. Xing
series ordinal
3
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language of work or name
English
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PubMed
publication date
15 October 2012
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published in
Human Molecular Genetics
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stated in
PubMed
volume
21
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PubMed
issue
R1
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PubMed
page(s)
R90-6
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cites work
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The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation
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The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans
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CBX3 regulates efficient RNA processing genome-wide
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28 September 2017
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Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
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28 September 2017
Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II.
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28 September 2017
Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila
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28 September 2017
Pre-mRNA splicing is a determinant of histone H3K36 methylation
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28 September 2017
Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36.
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28 September 2017
Determinants of nucleosome organization in primary human cells
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28 September 2017
Evolution of exon-intron structure and alternative splicing
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28 September 2017
Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.
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28 September 2017
Histone deacetylase activity modulates alternative splicing.
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28 September 2017
The changing faces of HP1: From heterochromatin formation and gene silencing to euchromatic gene expression: HP1 acts as a positive regulator of transcription
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28 September 2017
Reciprocal intronic and exonic histone modification regions in humans.
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28 September 2017
A novel mammalian complex containing Sin3B mitigates histone acetylation and RNA polymerase II progression within transcribed loci
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28 September 2017
Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution
1 reference
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PubMed Central
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28 September 2017
Sequence dependence of DNA bending rigidity
1 reference
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28 September 2017
Contrasting chromatin organization of CpG islands and exons in the human genome
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PubMed Central
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28 September 2017
The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation
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28 September 2017
Deciphering the splicing code
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459648
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28 September 2017
Transcript Elongation by RNA Polymerase II.
1 reference
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PubMed Central
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28 September 2017
Regulation of alternative splicing by histone modifications
1 reference
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PubMed Central
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28 September 2017
G+C content dominates intrinsic nucleosome occupancy
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28 September 2017
Epigenetics: molecular mechanisms and implications for disease.
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28 September 2017
Discovery and annotation of functional chromatin signatures in the human genome
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28 September 2017
The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes
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28 September 2017
Co-transcriptional splicing of constitutive and alternative exons
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28 September 2017
Chd1 regulates open chromatin and pluripotency of embryonic stem cells
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28 September 2017
Heterogeneous nuclear ribonucleoprotein L Is a subunit of human KMT3a/Set2 complex required for H3 Lys-36 trimethylation activity in vivo
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28 September 2017
Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing.
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28 September 2017
Patterns of exon-intron architecture variation of genes in eukaryotic genomes
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28 September 2017
The DNA-encoded nucleosome organization of a eukaryotic genome
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28 September 2017
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
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28 September 2017
Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome
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28 September 2017
Combinatorial control of exon recognition.
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28 September 2017
Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3.
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28 September 2017
The architecture of pre-mRNAs affects mechanisms of splice-site pairing.
1 reference
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28 September 2017
Identification and analysis of alternative splicing events conserved in human and mouse
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PubMed Central
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28 September 2017
A non-EST-based method for exon-skipping prediction
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459648
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28 September 2017
A slow RNA polymerase II affects alternative splicing in vivo
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459648
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28 September 2017
Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation
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PubMed Central
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28 September 2017
Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome
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PubMed Central
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28 September 2017
Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo
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PubMed Central
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28 September 2017
Statistical features of human exons and their flanking regions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459648
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28 September 2017
Architectural limits on split genes
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PubMed Central
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28 September 2017
Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.
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PubMed Central
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28 September 2017
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts
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PubMed Central
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28 September 2017
Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
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PubMed Central
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31 May 2018
Biased chromatin signatures around polyadenylation sites and exons
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PubMed Central
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31 May 2018
Nucleosomes are well positioned in exons and carry characteristic histone modifications
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459648
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31 May 2018
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
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31 May 2018
Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human.
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31 May 2018
Exon definition complexes contain the tri-snRNP and can be directly converted into B-like precatalytic splicing complexes
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21 January 2018
Chromatin organization marks exon-intron structure
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Crossref
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21 January 2018
Nucleosome positioning as a determinant of exon recognition
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Crossref
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21 January 2018
Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
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Crossref
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21 January 2018
Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons
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Crossref
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21 January 2018
The intranuclear site of excision of each intron in Balbiani ring 3 pre-mRNA is influenced by the time remaining to transcription termination and different excision efficiencies for the various introns.
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PubMed Central
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28 November 2018
Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22936691
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Intragenic chromatin modifications: a new layer in alternative splicing regulation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22936691
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/HMG/DDS353
0 references
PMC publication ID
3459648
1 reference
stated in
PubMed
PubMed publication ID
22936691
1 reference
stated in
PubMed
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