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Evolutionary conservation of long non-coding RNAs; sequence, structure, function
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title
Evolutionary conservation of long non-coding RNAs; sequence, structure, function
(English)
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author name string
Per Johnsson
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1
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Leonard Lipovich
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2
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Dan Grandér
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3
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Kevin V. Morris
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4
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language of work or name
English
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publication date
March 2014
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published in
Biochimica et Biophysica Acta
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volume
1840
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PubMed
issue
3
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PubMed
page(s)
1063-71
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cites work
Long noncoding RNAs: past, present, and future
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YY1 tethers Xist RNA to the inactive X nucleation center
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Long noncoding RNA as modular scaffold of histone modification complexes
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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
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Evidence for natural antisense transcript-mediated inhibition of microRNA function
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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
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Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor
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2-D structure of the A region of Xist RNA and its implication for PRC2 association
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MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
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MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA
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Distinctive structures between chimpanzee and human in a brain noncoding RNA
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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
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Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
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A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
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An RNA gene expressed during cortical development evolved rapidly in humans
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Interaction of Staufen1 with the 5' end of mRNA facilitates translation of these RNAs
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Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
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Finishing the euchromatic sequence of the human genome
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Over 20% of human transcripts might form sense-antisense pairs
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Ultraconserved Elements in the Human Genome
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Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
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Steroid receptor RNA activator stimulates proliferation as well as apoptosis in vivo
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Nuclear speckles: a model for nuclear organelles
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Sharp, an inducible cofactor that integrates nuclear receptor repression and activation
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A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
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Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes
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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
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Altered expression of estrogen receptor coregulators during human breast tumorigenesis
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Expression of the steroid receptor RNA activator in human breast tumors
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SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer
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Landscape of transcription in human cells
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MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
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The evolutionary pathway of x chromosome inactivation in mammals
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Long non-coding RNA GAS5 regulates apoptosis in prostate cancer cell lines
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The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing.
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A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
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A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails
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The hallmarks of cancer: a long non-coding RNA point of view.
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Origin and evolution of the long non-coding genes in the X-inactivation center
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Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns.
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A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
retrieved
28 September 2017
The tRNase Z family of proteins: physiological functions, substrate specificity and structural properties
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
retrieved
28 September 2017
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 September 2017
Chromatin remodeling in dosage compensation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 September 2017
Prediction of hybridization and melting for double-stranded nucleic acids
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
retrieved
28 September 2017
Comparative analysis of processed pseudogenes in the mouse and human genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 September 2017
X-chromosome inactivation: closing in on proteins that bind Xist RNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 September 2017
Chromosomal silencing and localization are mediated by different domains of Xist RNA.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 September 2017
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 September 2017
Sense-antisense gene pairs: sequence, transcription, and structure are not conserved between human and mouse
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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31 May 2018
3S: shotgun secondary structure determination of long non-coding RNAs.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 November 2018
SLIRP, a small SRA binding protein, is a nuclear receptor corepressor.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 November 2018
Expression of nuclear receptor coregulators in ovarian stromal and epithelial tumours
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 November 2018
The mammalian staufen protein localizes to the somatodendritic domain of cultured hippocampal neurons: implications for its involvement in mRNA transport.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909678
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28 November 2018
Nuclear domains of the RNA subunit of RNase P
1 reference
stated in
PubMed
reference URL
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.BBAGEN.2013.10.035
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586236
OpenCitations bibliographic resource ID
1586236
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586236
PMCID
3909678
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586236
PubMed ID
24184936
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586236
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