(Q51792442)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

3S: shotgun secondary structure determination of long non-coding RNAs (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

4

Karissa Y Sanbonmatsu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

3

Scott P Hennelly

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1

Irina V Novikova

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

publication date

6 August 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

volume

63

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

page(s)

170-177

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

Genome regulation by long noncoding RNAs.

7 March 2020

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

7 January 2021

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

7 January 2021

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Flowering time control: another window to the connection between antisense RNA and chromatin.

7 January 2021

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A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy

7 January 2021

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

7 January 2021

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Long intergenic noncoding RNAs: new links in cancer progression

7 January 2021

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Long noncoding RNAs are rarely translated in two human cell lines

7 January 2021

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Enhancer-driven chromatin interactions during development promote escape from silencing by a long non-coding RNA.

7 January 2021

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The non-coding Air RNA is required for silencing autosomal imprinted genes

7 January 2021

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Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

7 January 2021

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

7 January 2021

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

7 January 2021

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Riboswitches: emerging themes in RNA structure and function

7 January 2021

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

7 January 2021

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Riboswitches as versatile gene control elements

7 January 2021

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Tertiary contacts control switching of the SAM-I riboswitch

7 January 2021

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Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

7 January 2021

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Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch

7 January 2021

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Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

7 January 2021

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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

7 January 2021

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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

7 January 2021

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Crystal structure of the lysine riboswitch regulatory mRNA element

7 January 2021

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Structure of the SAM-II riboswitch bound to S-adenosylmethionine

7 January 2021

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Accurate SHAPE-directed RNA structure determination

7 January 2021

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Prediction of RNA secondary structure by maximizing pseudo-expected accuracy

7 January 2021

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Improving the accuracy of predicting secondary structure for aligned RNA sequences

7 January 2021

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A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more

7 January 2021

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RNAalifold: improved consensus structure prediction for RNA alignments

7 January 2021

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Thermodynamics of base pairing

7 January 2021

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Thermodynamics of coaxially stacked helixes with GA and CC mismatches

7 January 2021

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A periodic table of symmetric tandem mismatches in RNA.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.07.030

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.07.030

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

7 January 2021

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RNAstructure: software for RNA secondary structure prediction and analysis

7 January 2021

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

7 January 2021

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7 January 2021

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SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data

7 January 2021

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7 January 2021

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An integrated encyclopedia of DNA elements in the human genome

7 January 2021

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RNA consensus structure prediction with RNAalifold

7 January 2021

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7 January 2021

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QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis

7 January 2021

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Structure and function of long noncoding RNAs in epigenetic regulation

7 January 2021

1 reference

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Modular regulatory principles of large non-coding RNAs

7 January 2021

1 reference

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Archaeal proteins Nop10 and Gar1 increase the catalytic activity of Cbf5 in pseudouridylating tRNA.

7 January 2021

1 reference

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The role of RNA structure in posttranscriptional regulation of gene expression.

7 January 2021

1 reference

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7 January 2021

1 reference

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10.1016/J.YMETH.2013.07.030

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json

release_kun26bghkngcrgxp5ekrdd4ilq

7 March 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kun26bghkngcrgxp5ekrdd4ilq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23927838%20AND%20SRC:MED&resulttype=core&format=json