(Q38086776)

A new paradigm for developmental biology

31 March 2020

1 reference

lncRNAdb: a reference database for long noncoding RNAs

31 March 2020

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

31 March 2020

1 reference

RNA maps reveal new RNA classes and a possible function for pervasive transcription

31 March 2020

1 reference

The expanding RNA polymerase III transcriptome

31 March 2020

1 reference

Long noncoding RNAs with snoRNA ends

31 March 2020

1 reference

Differentiating protein-coding and noncoding RNA: challenges and ambiguities

31 March 2020

1 reference

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

31 March 2020

1 reference

Peptides encoded by short ORFs control development and define a new eukaryotic gene family

31 March 2020

1 reference

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

31 March 2020

1 reference

Long noncoding RNAs are rarely translated in two human cell lines

31 March 2020

1 reference

The evolution of RNAs with multiple functions

31 March 2020

1 reference

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

31 March 2020

1 reference

Proto-genes and de novo gene birth

31 March 2020

1 reference

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

31 March 2020

1 reference

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene

31 March 2020

1 reference

What is a gene, post-ENCODE? History and updated definition

31 March 2020

1 reference

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

31 March 2020

1 reference

Landscape of transcription in human cells

31 March 2020

1 reference

Translational control by the 3'-UTR: the ends specify the means.

31 March 2020

1 reference

Expression of distinct RNAs from 3' untranslated regions

31 March 2020

1 reference

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

31 March 2020

1 reference

The transcriptional activity of human Chromosome 22

31 March 2020

1 reference

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

31 March 2020

1 reference

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

31 March 2020

1 reference

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

31 March 2020

1 reference

Genome-wide transcription and the implications for genomic organization

31 March 2020

1 reference

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

31 March 2020

1 reference

Antisense transcription in the mammalian transcriptome

31 March 2020

1 reference

Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification.

31 March 2020

1 reference

A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization

31 March 2020

1 reference

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

31 March 2020

1 reference

De novo DNA methylation is dispensable for the initiation and propagation of X chromosome inactivation.

31 March 2020

1 reference

Intersection of the RNA interference and X-inactivation pathways

31 March 2020

1 reference

Regulation of X-chromosome counting by Tsix and Xite sequences

31 March 2020

1 reference

The RNA Modification Database, RNAMDB: 2011 update

31 March 2020

1 reference

Post-transcriptional nucleotide modification and alternative folding of RNA

31 March 2020

1 reference

Detection of RNA modifications.

31 March 2020

1 reference

Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA

31 March 2020

1 reference

N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO

31 March 2020

1 reference

Grand challenge commentary: RNA epigenetics?

31 March 2020

1 reference

The dynamic landscapes of RNA architecture

31 March 2020

1 reference

The interaction networks of structured RNAs

31 March 2020

1 reference

An assembly landscape for the 30S ribosomal subunit

31 March 2020

1 reference

Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: isoform structure, expression, and functions

31 March 2020

1 reference

A structural understanding of the dynamic ribosome machine

31 March 2020

1 reference

Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

31 March 2020

1 reference

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

31 March 2020

1 reference

Genome-wide measurement of RNA secondary structure in yeast

31 March 2020

1 reference

Engineering biological systems with synthetic RNA molecules

31 March 2020

1 reference

Higher-order cellular information processing with synthetic RNA devices

31 March 2020

1 reference

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.

31 March 2020

1 reference

A rule of seven in Watson-Crick base-pairing of mismatched sequences.

31 March 2020

1 reference

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

31 March 2020

1 reference

3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

31 March 2020

1 reference

Epigenetics: heterochromatin meets RNAi.

31 March 2020

1 reference

Ribozymes: Flexible molecular devices at work

31 March 2020

1 reference

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

31 March 2020

1 reference

RNA-binding proteins: modular design for efficient function

31 March 2020

1 reference

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

31 March 2020

1 reference

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

31 March 2020

1 reference

Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions

31 March 2020

1 reference

Emerging structural themes in large RNA molecules

31 March 2020

1 reference

Potential in vivo roles of nucleic acid triple-helices

31 March 2020

1 reference

R loops: from transcription byproducts to threats to genome stability

31 March 2020

1 reference

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

31 March 2020

1 reference

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

31 March 2020

1 reference

YY1 tethers Xist RNA to the inactive X nucleation center

31 March 2020

1 reference

A stress-responsive RNA switch regulates VEGFA expression.

31 March 2020

1 reference

Organization of intracellular reactions with rationally designed RNA assemblies

31 March 2020

1 reference

Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a

31 March 2020

1 reference

lincRNAs act in the circuitry controlling pluripotency and differentiation

31 March 2020

1 reference

RNA traffic control of chromatin complexes

31 March 2020

1 reference

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

31 March 2020

1 reference

Long noncoding RNA as modular scaffold of histone modification complexes

31 March 2020

1 reference

Role of histone H3 lysine 27 methylation in X inactivation

31 March 2020

1 reference

Chromosomal silencing and localization are mediated by different domains of Xist RNA.

31 March 2020

1 reference

The matrix protein hnRNP U is required for chromosomal localization of Xist RNA.

31 March 2020

1 reference

Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation

31 March 2020

1 reference

lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements

31 March 2020

1 reference

Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock

31 March 2020

1 reference

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

31 March 2020

1 reference

Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax

31 March 2020

1 reference

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

31 March 2020

1 reference

Epigenetics of imprinted long non-coding RNAs

31 March 2020

1 reference

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

31 March 2020

1 reference

Complex Loci in human and mouse genomes

31 March 2020

1 reference

Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations

31 March 2020

1 reference

Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation

31 March 2020

1 reference

Heterochromatin maintenance and establishment: lessons from the mouse pericentromere

31 March 2020

1 reference

SUMOylation promotes de novo targeting of HP1α to pericentric heterochromatin

31 March 2020

1 reference

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

31 March 2020

1 reference

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation

31 March 2020

1 reference

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

31 March 2020

1 reference

Nucleation of nuclear bodies by RNA.

31 March 2020

1 reference

Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila.

31 March 2020

1 reference

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

31 March 2020

1 reference

ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

31 March 2020

1 reference

Network biology: understanding the cell's functional organization

31 March 2020

1 reference

The genetic signatures of noncoding RNAs

31 March 2020

1 reference

Structural and functional differences in the long non-coding RNA hotair in mouse and human

31 March 2020

1 reference

The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult

31 March 2020

1 reference

Chromatin-modifying proteins in cancer.

31 March 2020

1 reference

Rapid turnover of long noncoding RNAs and the evolution of gene expression

31 March 2020

1 reference

An RNA gene expressed during cortical development evolved rapidly in humans

31 March 2020

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Forces shaping the fastest evolving regions in the human genome

31 March 2020

1 reference

A comparison of genotype-phenotype maps for RNA and proteins

31 March 2020

1 reference

Complex architecture and regulated expression of the Sox2ot locus during vertebrate development

31 March 2020

1 reference

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

31 March 2020

1 reference

From sequences to shapes and back: a case study in RNA secondary structures.

31 March 2020

1 reference

Evolution of a transfer RNA gene through a point mutation in the anticodon

31 March 2020

1 reference

Neutral network sizes of biological RNA molecules can be computed and are not atypically small

31 March 2020

1 reference

Properties of artificial proteins with random sequences

31 March 2020

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Compact and ordered collapse of randomly generated RNA sequences

31 March 2020

1 reference

The role of robustness in phenotypic adaptation and innovation

31 March 2020

1 reference

Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

31 March 2020

1 reference

Is evolvability evolvable?

31 March 2020

1 reference

Metabolic enzymes that bind RNA: yet another level of cellular regulatory network?

31 March 2020

1 reference

12 December 2020

Epigenetics of imprinted long noncoding RNAs

1 reference

12 December 2020

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses

1 reference

12 December 2020

The X as model for RNA's niche in epigenomic regulation

1 reference

12 December 2020