(Q24655701)

Marjan E Askarian-Amiri

7

0 references

Paulo P Amaral

Paulo P Amaral

2

0 references

Ken C. Pang

Ken C Pang

4

0 references

Giulia Soldà

Giulia Soldà

9

0 references

Cas Simons

Cas Simons

10

0 references

Marcel E. Dinger

Marcel E Dinger

1

0 references

Andrew C Perkins

Andrew C Perkins

14

0 references

John S. Mattick

John S Mattick

15

0 references

Sean Grimmond

Sean M Grimmond

13

0 references

author name string

Tim R Mercer

3

0 references

Stephen J Bruce

5

0 references

Brooke B Gardiner

6

0 references

Kelin Ru

8

0 references

Susan M Sunkin

11

0 references

Mark L Crowe

describes a project that uses

12

0 references

language of work or name

English

0 references

publication date

September 2008

0 references

published in

Genome Research

0 references

volume

18

0 references

issue

9

0 references

page(s)

1433-45

0 references

limma

1 reference

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/2527704

inferred from PubMed Central ID database lookup

cites work

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Specific expression of long noncoding RNAs in the mouse brain

7 April 2017

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Ultraconservation identifies a small subset of extremely constrained developmental enhancers

7 April 2017

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RNA is an integral component of chromatin that contributes to its structural organization

7 April 2017

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

7 April 2017

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

7 April 2017

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Silencing by imprinted noncoding RNAs: is transcription the answer?

7 April 2017

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Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

7 April 2017

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

7 April 2017

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Complex Loci in human and mouse genomes

7 April 2017

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Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis

7 April 2017

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A noncoding RNA is a potential marker of cell fate during mammary gland development

7 April 2017

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MicroRNA fingerprints during human megakaryocytopoiesis

7 April 2017

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A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

7 April 2017

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miRBase: microRNA sequences, targets and gene nomenclature

7 April 2017

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Dendritic BC1 RNA in translational control mechanisms

7 April 2017

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Core transcriptional regulatory circuitry in human embryonic stem cells

7 April 2017

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

7 April 2017

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Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

7 April 2017

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Global and Hox-specific roles for the MLL1 methyltransferase

7 April 2017

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Fast and reliable prediction of noncoding RNAs

7 April 2017

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Highly conserved non-coding sequences are associated with vertebrate development

7 April 2017

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RNAdb--a comprehensive mammalian noncoding RNA database

7 April 2017

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An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region

7 April 2017

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BLAT—The BLAST-Like Alignment Tool

7 April 2017

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Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4

7 April 2017

1 reference

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Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Chromatin architecture and nuclear RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Genome-wide atlas of gene expression in the adult mouse brain

7 April 2017

1 reference

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Ultraconserved Elements in the Human Genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

7 April 2017

1 reference

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The transcriptional landscape of the mammalian genome

7 April 2017

1 reference

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Establishment in culture of pluripotential cells from mouse embryos

7 April 2017

1 reference

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CpG islands in vertebrate genomes

7 April 2017

1 reference

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An extended transcriptional network for pluripotency of embryonic stem cells

7 April 2017

1 reference

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Polycomb silencing mechanisms and the management of genomic programmes

7 April 2017

1 reference

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A protein interaction network for pluripotency of embryonic stem cells

7 April 2017

1 reference

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Dissecting self-renewal in stem cells with RNA interference

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Control of developmental regulators by Polycomb in human embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

MicroRNA expression in zebrafish embryonic development

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Normalization of cDNA microarray data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Embryonic stem cell-specific MicroRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Developmental functions of the Distal-less/Dlx homeobox genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

The non-coding Air RNA is required for silencing autosomal imprinted genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Ecsit is required for Bmp signaling and mesoderm formation during mouse embryogenesis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

In vivo mutagenesis of the Hoxb8 hexapeptide domain leads to dominant homeotic transformations that mimic the loss-of-function mutations in genes of the Hoxb cluster

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Dlx genes encode DNA-binding proteins that are expressed in an overlapping and sequential pattern during basal ganglia differentiation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A chromatin landmark and transcription initiation at most promoters in human cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Polycomb complexes repress developmental regulators in murine embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

RNA maps reveal new RNA classes and a possible function for pervasive transcription

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

In vivo enhancer analysis of human conserved non-coding sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A brain-specific microRNA regulates dendritic spine development

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

"Stemness": transcriptional profiling of embryonic and adult stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Expression pattern of the mouse T gene and its role in mesoderm formation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

How does noncoding transcription regulate Hox genes?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Global transcription in pluripotent embryonic stem cells.

25 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

RNA-mediated epigenetic programming of a genome-rearrangement pathway

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Coordinate gene regulation during hematopoiesis is related to genomic organization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Transcription factor networks in embryonic stem cells and testicular cancer and the definition of epigenetics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A new paradigm for developmental biology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

In vitro differentiation of murine embryonic stem cells toward a renal lineage

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

The journey of developing hematopoietic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

The expression profile of microRNAs in mouse embryos

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Transcriptional profiling of mouse and human ES cells identifies SLAIN1, a novel stem cell gene.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

MLL associates specifically with a subset of transcriptionally active target genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Replication and transcription: shaping the landscape of the genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Small regulatory RNAs in mammals

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

DLEU2 encodes an antisense RNA for the putative bicistronic RFP2/LEU5 gene in humans and mouse

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Intergenic enhancers with distinct activities regulate Dlx gene expression in the mesenchyme of the branchial arches.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

An abundance of bidirectional promoters in the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Organizing axes in time and space; 25 years of colinear tinkering

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Retinoids regulate the anterior expression boundaries of 5' Hoxb genes in posterior hindbrain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Pluripotent stem cells--model of embryonic development, tool for gene targeting, and basis of cell therapy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A stem cell molecular signature

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Antisense RNA in imprinting: spreading silence through Air.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Embryo-derived stem cells: of mice and men.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

The zinc finger-containing transcription factors GATA-4, -5, and -6. Ubiquitously expressed regulators of tissue-specific gene expression.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Disruption and sequence identification of 2,000 genes in mouse embryonic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Sequence, organization, and transcription of the Dlx-1 and Dlx-2 locus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

In vitro differentiation of embryonic stem cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Prolactin regulation of beta-casein gene expression and of a cytosolic 120-kd protein in a cloned mouse mammary epithelial cell line

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Analysis of mouse Evx genes: Evx-1 displays graded expression in the primitive streak

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Immunoprecipitation of mRNA-protein complexes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

A transitional stage in the commitment of mesoderm to hematopoiesis requiring the transcription factor SCL/tal-1.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Murine Wnt-11 and Wnt-12 have temporally and spatially restricted expression patterns during embryonic development.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527704

Disabled-2 is an epithelial surface positioning gene

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18562676

12 December 2020

inferred from PubMed ID database lookup

Genetic patterning of the developing mouse tail at the time of posterior neuropore closure

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18562676

12 December 2020

inferred from PubMed ID database lookup

Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18562676

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.078378.108

1 reference

548783

548783

1 reference

1 reference

1 reference