(Q34655867)

3 August 2017

title

Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing (English)

1 reference

high-throughput sequencing

3 August 2017

main subject

1 reference

Yue Wan

1

1 reference

3 August 2017

Kun Qu

series ordinal

2

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3 August 2017

Zhengqing Ouyang

series ordinal

3

1 reference

3 August 2017

Howard Y Chang

series ordinal

4

1 reference

3 August 2017

publication date

4 April 2013

1 reference

3 August 2017

1 reference

3 August 2017

volume

8

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3 August 2017

issue

5

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3 August 2017

page(s)

849-869

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3 August 2017

cites work

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1 reference

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Accurate SHAPE-directed RNA structure determination

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Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

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Global analysis of RNA secondary structure in two metazoans.

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Genome-wide measurement of RNA folding energies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.045

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

21 January 2018

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SHAPE-directed RNA secondary structure prediction

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1 reference

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Structure mapping of 5'-32P-labeled RNA with S1 nuclease

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Probing the structure of RNAs in solution

21 January 2018

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Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species

21 January 2018

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

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Bidirectional promoters generate pervasive transcription in yeast

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RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

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Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites

21 January 2018

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Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases

31 March 2020

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SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data

31 March 2020

1 reference

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Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site

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1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23558785

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

On the recognition of helical RNA by cobra venom V1 nuclease.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23558785

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NPROT.2013.045

1 reference

Dimensions Publication ID

3 August 2017

1026602741

0 references

1 reference