(Q27004656)

A. Consiglio

3

0 references

Bruno Fosso

B. Fosso

2

0 references

Giorgio Grillo

G. Grillo

5

0 references

Gabriel Valiente

G. Valiente

10

0 references

Flavio Licciulli

F. Licciulli

6

0 references

Graziano Pesole

G. Pesole

11

0 references

author name string

G. De Caro

4

1 reference

S. Liuni

7

1 reference

M. Marzano

8

1 reference

D. Alonso-Alemany

9

1 reference

language of work or name

1 reference

November 2012

1 reference

Briefings in Bioinformatics

published in

1 reference

volume

13

1 reference

issue

6

1 reference

page(s)

682-95

1 reference

Metagenomics: Concept, methodology, ecological inference and recent advances

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances

21 January 2018

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Metagenomic analysis of brain abscesses identifies specific bacterial associations

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Analysis of the salivary microbiome using culture-independent techniques

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Short pyrosequencing reads suffice for accurate microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys

21 January 2018

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Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Polymerase chain reaction primers miss half of rRNA microbial diversity

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies

21 January 2018

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Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

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Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

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Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes.

21 January 2018

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454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Characterization of the oral fungal microbiome (mycobiome) in healthy individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The magnitude of fungal diversity: the 1.5 million species estimate revisited

21 January 2018

1 reference

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The molecular revolution in ectomycorrhizal ecology: peeking into the black-box.

21 January 2018

1 reference

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After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Internal transcribed spacer sequencing versus biochemical profiling for identification of medically important yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Multilocus DNA sequence comparisons rapidly identify pathogenic molds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Evolutionary studies of ectomycorrhizal fungi: recent advances and future directions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

MEGAN analysis of metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Analysis of 16S rRNA environmental sequences using MEGAN

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Flexible taxonomic assignment of ambiguous sequencing reads.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The NCBI Taxonomy database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Computational challenges of sequence classification in microbiomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

A bioinformatician's guide to metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The International Nucleotide Sequence Database Collaboration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

DDBJ working on evaluation and classification of bacterial genes in INSDC

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The European Nucleotide Archive

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The Sequence Read Archive: explosive growth of sequencing data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

UCHIME improves sensitivity and speed of chimera detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

ARB: a software environment for sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Release LTPs104 of the All-Species Living Tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The RDP-II (Ribosomal Database Project).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

An edit script for taxonomic classifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

The ITS2 Database III--sequences and structures for phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Polymorphic internal transcribed spacer region 1 DNA sequences identify medically important yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Assessment of ribosomal large-subunit D1-D2, internal transcribed spacer 1, and internal transcribed spacer 2 regions as targets for molecular identification of medically important Aspergillus species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

HMMER web server: interactive sequence similarity searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

BioJava: an open-source framework for bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS036

21 January 2018

Identifiers

DOI

10.1093/BIB/BBS036

1 reference

Consolidated OpenCitations Corpus – April 2017

journals/bib/SantamariaFCCGLLMAVP12

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

22786784

1 reference

Consolidated OpenCitations Corpus – April 2017