(Q27021183)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

high-throughput sequencing

3 March 2020

main subject

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

author name string

Raffaele Giancarlo

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Simona E Rombo

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

language of work or name

1 reference

17 December 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

Briefings in Bioinformatics

3 March 2020

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

volume

15

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

issue

3

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

page(s)

390-406

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

On the future of genomic data

3 March 2020

cites work

1 reference

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Textual data compression in computational biology: a synopsis

21 January 2018

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21 January 2018

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A Subquadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrices

21 January 2018

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Compressing DNA sequence databases with coil

21 January 2018

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Data structures and compression algorithms for genomic sequence data

21 January 2018

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Human genomes as email attachments

21 January 2018

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Data structures and compression algorithms for high-throughput sequencing technologies

21 January 2018

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Compressed indexing and local alignment of DNA.

21 January 2018

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G-SQZ: compact encoding of genomic sequence and quality data

21 January 2018

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Robust relative compression of genomes with random access

21 January 2018

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Compression of DNA sequence reads in FASTQ format.

21 January 2018

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Efficient storage of high throughput DNA sequencing data using reference-based compression

21 January 2018

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Improving transmission efficiency of large sequence alignment/map (SAM) files

21 January 2018

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GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data

21 January 2018

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ReCoil - an algorithm for compression of extremely large datasets of dna data

21 January 2018

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A novel compression tool for efficient storage of genome resequencing data

21 January 2018

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Transformations for the compression of FASTQ quality scores of next-generation sequencing data

21 January 2018

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Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.

21 January 2018

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Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data

21 January 2018

1 reference

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SCALCE: boosting sequence compression algorithms using locally consistent encoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Iterative dictionary construction for compression of large DNA data sets

21 January 2018

1 reference

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Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

21 January 2018

1 reference

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Comparing biological networks via graph compression

21 January 2018

1 reference

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NGC: lossless and lossy compression of aligned high-throughput sequencing data

21 January 2018

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Compressing genomic sequence fragments using SlimGene

21 January 2018

1 reference

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Adaptive efficient compression of genomes

21 January 2018

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Space/time trade-offs in hash coding with allowable errors

21 January 2018

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QualComp: a new lossy compressor for quality scores based on rate distortion theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

The input/output complexity of sorting and related problems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

A Method for the Construction of Minimum-Redundancy Codes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Arithmetic coding for data compression

21 January 2018

1 reference

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A universal algorithm for sequential data compression

21 January 2018

1 reference

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Genome compression: a novel approach for large collections.

21 January 2018

1 reference

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The variant call format and VCFtools

21 January 2018

1 reference

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The human genome contracts again

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

ZTR: a new format for DNA sequence trace data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Compressed suffix tree--a basis for genome-scale sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Prospects and limitations of full-text index structures in genome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Compressive genomics for protein databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT088

Sequence squeeze: an open contest for sequence compression.

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1093/BIB/BBT088

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24347576%20AND%20SRC:MED&resulttype=core&format=json

journals/bib/GiancarloRU14

3 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017