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CTCF: the protein, the binding partners, the binding sites and their chromatin loops
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title
CTCF: the protein, the binding partners, the binding sites and their chromatin loops
(English)
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author name string
S. J. B. Holwerda
series ordinal
1
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W. de Laat
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2
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Crossref
language of work or name
English
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PubMed
publication date
2013
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PubMed
published in
Philosophical Transactions of the Royal Society B
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PubMed
volume
368
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stated in
PubMed
issue
1620
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PubMed
page(s)
20120369
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PubMed
cites work
Widespread plasticity in CTCF occupancy linked to DNA methylation
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Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
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21 March 2017
Mediator and cohesin connect gene expression and chromatin architecture
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21 March 2017
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
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21 March 2017
CTCF physically links cohesin to chromatin
1 reference
stated in
PubMed Central
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21 March 2017
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
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21 March 2017
CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
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PubMed Central
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21 March 2017
Conserved CTCF insulator elements flank the mouse and human beta-globin loci
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21 March 2017
Transcriptional repression by the insulator protein CTCF involves histone deacetylases
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21 March 2017
The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation
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21 March 2017
An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes
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PubMed Central
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21 March 2017
High-resolution profiling of histone methylations in the human genome
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21 March 2017
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
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21 March 2017
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
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PubMed Central
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21 March 2017
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
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PubMed Central
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21 March 2017
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
1 reference
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PubMed Central
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21 March 2017
Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation
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PubMed Central
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21 March 2017
Topological domains in mammalian genomes identified by analysis of chromatin interactions
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21 March 2017
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
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PubMed Central
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21 March 2017
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
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21 March 2017
The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso
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21 March 2017
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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21 March 2017
A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene
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PubMed Central
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21 March 2017
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
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PubMed Central
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Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
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21 March 2017
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
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PubMed Central
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21 March 2017
An oestrogen-receptor-α-bound human chromatin interactome
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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
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The long-range interaction landscape of gene promoters
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7 April 2017
A map of the cis-regulatory sequences in the mouse genome
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PubMed Central
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7 April 2017
Spatial partitioning of the regulatory landscape of the X-inactivation centre
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7 April 2017
Cohesin: its roles and mechanisms
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PubMed Central
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7 April 2017
Cohesins functionally associate with CTCF on mammalian chromosome arms
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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7 April 2017
Cohesin mediates transcriptional insulation by CCCTC-binding factor
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PubMed Central
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7 April 2017
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
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PubMed Central
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28 September 2017
Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
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PubMed Central
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28 September 2017
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages
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PubMed Central
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28 September 2017
Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression
1 reference
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PubMed Central
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28 September 2017
Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development
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PubMed Central
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28 September 2017
Cohesin and chromatin organisation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
A co-ordinated interaction between CTCF and ER in breast cancer cells
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PubMed Central
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28 September 2017
A regulatory archipelago controls Hox genes transcription in digits
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28 September 2017
ADP-ribose polymers localized on Ctcf-Parp1-Dnmt1 complex prevent methylation of Ctcf target sites
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PubMed Central
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28 September 2017
Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster
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PubMed Central
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28 September 2017
Cohesin regulates MHC class II genes through interactions with MHC class II insulators
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PubMed Central
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28 September 2017
Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.
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28 September 2017
A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation
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PubMed Central
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28 September 2017
CTCF-mediated functional chromatin interactome in pluripotent cells
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PubMed Central
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28 September 2017
Cohesin mediates chromatin interactions that regulate mammalian β-globin expression
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Specific sites in the C terminus of CTCF interact with the SA2 subunit of the cohesin complex and are required for cohesin-dependent insulation activity
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber
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PubMed Central
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28 September 2017
Functional analysis of CTCF during mammalian limb development
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
CTCF controls expression and chromatin architecture of the human major histocompatibility complex class II locus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
A CTCF-independent role for cohesin in tissue-specific transcription
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
A wave of nascent transcription on activated human genes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
CTCF and its protein partners: divide and rule?
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
CTCF regulates cell cycle progression of alphabeta T cells in the thymus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
CCCTC-binding factor activates PARP-1 affecting DNA methylation machinery.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
We gather together: insulators and genome organization
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Analysis of the H19ICR insulator
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
28 September 2017
Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Thyroid hormone-regulated enhancer blocking: cooperation of CTCF and thyroid hormone receptor
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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28 September 2017
Parental-origin-specific epigenetic modification of the mouse H19 gene
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
28 September 2017
A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
28 September 2017
CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
28 September 2017
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
31 May 2018
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
31 May 2018
Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
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31 May 2018
The beta-globin nuclear compartment in development and erythroid differentiation
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Crossref
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https://api.crossref.org/works/10.1098%2FRSTB.2012.0369
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21 January 2018
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1098%2FRSTB.2012.0369
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21 January 2018
CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1098%2FRSTB.2012.0369
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21 January 2018
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1098%2FRSTB.2012.0369
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21 January 2018
The DNA-Binding Protein CTCF Limits Proximal Vκ Recombination and Restricts κ Enhancer Interactions to the Immunoglobulin κ Light Chain Locus
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1098%2FRSTB.2012.0369
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21 January 2018
DNA-binding factors shape the mouse methylome at distal regulatory regions
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682731
retrieved
28 November 2018
Epigenetic mechanisms underlying the imprinting of the mouse H19 gene
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23650640
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1098/RSTB.2012.0369
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1149052
OpenCitations bibliographic resource ID
1149052
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1149052
PMC publication ID
3682731
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1149052
PubMed publication ID
23650640
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1149052
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