(Q27318756)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Inferring regulatory networks from experimental morphological phenotypes: a computational method reverse-engineers planarian regeneration (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1

Daniel Lobo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Michael Levin

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

language of work or name

English

0 references

publication date

4 June 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

16 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

page(s)

e1004295

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

16 February 2020

copyright license

start time

4 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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The segment polarity network is a robust developmental module

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28 September 2017

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A linear-encoding model explains the variability of the target morphology in regeneration

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Automated refinement and inference of analytical models for metabolic networks

28 September 2017

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Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regeneration

28 September 2017

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28 September 2017

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28 September 2017

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Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response

28 September 2017

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Gradients in planarian regeneration and homeostasis

28 September 2017

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On growth and form: a Cartesian coordinate system of Wnt and BMP signaling specifies bilaterian body axes

28 September 2017

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Comparison of evolutionary algorithms in gene regulatory network model inference.

28 September 2017

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28 September 2017

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Long-range neural and gap junction protein-mediated cues control polarity during planarian regeneration

28 September 2017

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Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Predictive modeling of signaling crosstalk during C. elegans vulval development

28 September 2017

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Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together

28 September 2017

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From in vivo to in silico biology and back

28 September 2017

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Reverse engineering the gap gene network of Drosophila melanogaster

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456145

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

28 September 2017

1 reference

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Cyberinfrastructure: empowering a "third way" in biomedical research

28 September 2017

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28 September 2017

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Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster

28 September 2017

1 reference

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Different strategies for midline formation in bilaterians

28 September 2017

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28 September 2017

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Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling

28 September 2017

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Allometric scaling and proportion regulation in the freshwater planarian Schmidtea mediterranea

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Programming the Drosophila embryo 2: from genotype to phenotype

28 September 2017

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28 September 2017

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The molecular logic for planarian regeneration along the anterior-posterior axis.

28 September 2017

1 reference

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Normalized shape and location of perturbed craniofacial structures in the Xenopus tadpole reveal an innate ability to achieve correct morphology

31 May 2018

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Polarized notum activation at wounds inhibits Wnt function to promote planarian head regeneration

31 May 2018

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A Bmp/Admp regulatory circuit controls maintenance and regeneration of dorsal-ventral polarity in planarians

31 May 2018

1 reference

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Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis

31 May 2018

1 reference

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Quantitative analysis of ultrasensitive responses

31 May 2018

1 reference

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Programming the Drosophila embryo.

31 May 2018

1 reference

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Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis

31 May 2018

1 reference

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A computational model of teeth and the developmental origins of morphological variation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

The origin and loss of periodic patterning in the turtle shell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

A predictive model for transcriptional control of physiology in a free living cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

Model for cooperative control of positional information in Drosophila by bicoid and maternal hunchback.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

Dynamic control of positional information in the early Drosophila embryo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

Silencing of Smed-betacatenin1 generates radial-like hypercephalized planarians.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

Regeneration in Planarians

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

Artificial Intelligence. Amplify scientific discovery with artificial intelligence.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004295

The BMP pathway is essential for re-specification and maintenance of the dorsoventral axis in regenerating and intact planarians.

21 January 2018

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Genetic algorithms: principles of natural selection applied to computation.

21 January 2018

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A comparison of bloat control methods for genetic programming

21 January 2018

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Noggin and Noggin-Like Genes Control Dorsoventral Axis Regeneration in Planarians

21 January 2018

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'Big frog, small frog'--maintaining proportions in embryonic development: delivered on 2 July 2008 at the 33rd FEBS Congress in Athens, Greece.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456145

Stripe forming architecture of the gap gene system

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456145

A serial threshold theory of regeneration

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26042810

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bone morphogenetic protein is required for dorso-ventral patterning in the planarian Dugesia japonica

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26042810

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26042810

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1004295

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

DBLP publication ID

journals/ploscb/LoboL15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26042810%20AND%20SRC:MED&resulttype=core&format=json