(Q27335771)

26 June 2017

Chromatin topology is coupled to Polycomb group protein subnuclear organization (English)

1 reference

26 June 2017

7

0 references

Ruslan I Sadreyev

6

object named as

Ruslan I Sadreyev

1 reference

26 June 2017

7

Xiaowei Zhuang

1 reference

26 June 2017

Ajazul H Wani

1

1 reference

26 June 2017

Alistair N Boettiger

2

1 reference

26 June 2017

Patrick Schorderet

3

1 reference

26 June 2017

Ayla Ergun

4

1 reference

26 June 2017

Christine Münger

5

1 reference

26 June 2017

Robert E Kingston

8

1 reference

26 June 2017

Nicole J Francis

9

1 reference

26 June 2017

language of work or name

English

0 references

publication date

13 January 2016

1 reference

26 June 2017

Nature Communications

1 reference

26 June 2017

7

1 reference

26 June 2017

10291

1 reference

Creative Commons Attribution 4.0 International

26 June 2017

start time

13 January 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

CTCF: an architectural protein bridging genome topology and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Insulators target active genes to transcription factories and polycomb-repressed genes to polycomb bodies

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Chromatin: constructing the big picture

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Fast and accurate short read alignment with Burrows-Wheeler transform

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Multicolor super-resolution imaging with photo-switchable fluorescent probes

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

The SAM domain of polyhomeotic forms a helical polymer

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Fast gapped-read alignment with Bowtie 2

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

A polycomb group protein is retained at specific sites on chromatin in mitosis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Resolution doubling in 3D-STORM imaging through improved buffers

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Occupying Chromatin: Polycomb Mechanisms for Getting to Genomic Targets, Stopping Transcriptional Traffic, and Staying Put

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

BEDTools: a flexible suite of utilities for comparing genomic features

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

fourSig: a method for determining chromosomal interactions in 4C-Seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Polycomb silencing: from linear chromatin domains to 3D chromosome folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Multiplexed Illumina sequencing libraries from picogram quantities of DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

The hierarchy of the 3D genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Functional implications of genome topology.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Phosphine quenching of cyanine dyes as a versatile tool for fluorescence microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Complexity of chromatin folding is captured by the strings and binders switch model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Robust 4C-seq data analysis to screen for regulatory DNA interactions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Statistical deconvolution for superresolution fluorescence microscopy.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Transcription-independent function of Polycomb group protein PSC in cell cycle control

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Polycomb: a paradigm for genome organization from one to three dimensions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Three-dimensional folding and functional organization principles of the Drosophila genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Diverse tumor pathology due to distinctive patterns of JAK/STAT pathway activation caused by different Drosophila polyhomeotic alleles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Conformation regulation of the X chromosome inactivation center: a model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Polycomb group proteins: repression in 3D.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Interactions among Polycomb domains are guided by chromosome architecture

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Chromatin higher-order structures and gene regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Loss of the Polycomb group gene polyhomeotic induces non-autonomous cell overproliferation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Design and analysis of ChIP-seq experiments for DNA-binding proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Requirement for sex comb on midleg protein interactions in Drosophila polycomb group repression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Stabilization of chromatin structure by PRC1, a Polycomb complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

The Drosophila polycomb group protein Psc contacts ph and Pc through specific conserved domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Regulatory elements of the bithorax complex that control expression along the anterior-posterior axis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

The growth-suppressive function of the polycomb group protein polyhomeotic is mediated by polymerization of its sterile alpha motif (SAM) domain

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Histone acetylation and the maintenance of chromatin compaction by Polycomb repressive complexes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Thermodynamic pathways to genome spatial organization in the cell nucleus

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4735512

Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila.

2 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

RNAi components are required for nuclear clustering of Polycomb group response elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

O-GlcNAcylation prevents aggregation of the Polycomb group repressor polyhomeotic

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

The Polyhomeotic protein induces hyperplastic tissue overgrowth through the activation of the JAK/STAT pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

The nuclear organization of Polycomb/Trithorax group response elements in larval tissues of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

Reconstitution of a functional core polycomb repressive complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

The pivot algorithm: A highly efficient Monte Carlo method for the self-avoiding walk

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

Preparation of nuclear and cytoplasmic extracts from mammalian cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26759081

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Diffusion-based DNA target colocalization by thermodynamic mechanisms

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26759081

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Preparation of nuclear and cytoplasmic extracts from mammalian cells

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS10291

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NCOMMS10291

1 reference

Dimensions Publication ID

26 June 2017

0 references

1037824188

0 references

OpenCitations bibliographic resource ID

3137988

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

0 references

1 reference