(Q27348311)

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Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response

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Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response (English)

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Caenorhabditis elegans

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Mark Bender Gerstein

17

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Anthony A. Hyman

object named as

Anthony A Hyman

16

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object named as

Susan E Mango

18

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21

object named as

Valerie Reinke

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Michael P. Snyder

22

object named as

Michael Snyder

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Ladeana Hillier

12

object named as

LaDeana W Hillier

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20

object named as

Robert H Waterston

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6

object named as

Judith Janette

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author name string

Mei Zhong

1

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Wei Niu

2

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Zhi John Lu

3

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Mihail Sarov

4

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John I Murray

5

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Debasish Raha

7

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Karyn L Sheaffer

8

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Hugo Y K Lam

9

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Elicia Preston

10

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Cindie Slightham

11

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Trisha Brock

13

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Ashish Agarwal

14

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Raymond Auerbach

15

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Stuart K Kim

19

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publication date

February 2010

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6

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2

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e1000848

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copyright license

Creative Commons Attribution 4.0 International

19 February 2010

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April 2022 Public Data File from Crossref

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The transcriptional landscape of the yeast genome defined by RNA sequencing

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21 March 2017

A role for autophagy in the extension of lifespan by dietary restriction in C. elegans

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21 March 2017

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

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21 March 2017

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

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21 March 2017

Whole-genome analysis of temporal gene expression during foregut development

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21 March 2017

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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21 March 2017

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

1 reference

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21 March 2017

MEME SUITE: tools for motif discovery and searching

1 reference

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7 April 2017

Genome-wide mapping of in vivo protein-DNA interactions

1 reference

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7 April 2017

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

7 April 2017

Autophagy genes are essential for dauer development and life-span extension in C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

7 April 2017

Creation of low-copy integrated transgenic lines in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

7 April 2017

RNA Pol II accumulates at promoters of growth genes during developmental arrest.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

Modeling the dynamics of transcriptional gene regulatory networks for animal development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

The Target of Rapamycin pathway antagonizes pha-4/FoxA to control development and aging.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

Dual roles of autophagy in the survival of Caenorhabditis elegans during starvation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

PHA-4/FoxA cooperates with TAM-1/TRIM to regulate cell fate restriction in the C. elegans foregut

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

pha-4, an HNF-3 homolog, specifies pharyngeal organ identity in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

29 September 2017

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

2 June 2018

pha-4 is Ce-fkh-1, a fork head/HNF-3alpha,beta,gamma homolog that functions in organogenesis of the C. elegans pharynx

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

2 June 2018

Transcriptionally repressed germ cells lack a subpopulation of phosphorylated RNA polymerase II in early embryos of Caenorhabditis elegans and Drosophila melanogaster.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

2 June 2018

The pha-4 gene is required to generate the pharyngeal primordium of Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2824807

2 June 2018

Transcriptional regulation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000848

21 January 2018

Onset of C. elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000848

21 January 2018

PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000848

21 January 2018

TGF-beta signaling

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000848

21 January 2018

A recombineering pipeline for functional genomics applied to Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000848

21 January 2018

Identifiers

10.1371/JOURNAL.PGEN.1000848

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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