(Q27499038)

1

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Kieran Smallbone

object named as

Kieran Smallbone

2

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Pedro Mendes

object named as

Pedro Mendes

4

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author name string

Larry P Walker

A protocol for generating a high-quality genome-scale metabolic reconstruction

5

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language of work or name

1 reference

4 June 2012

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published in

BMC Systems Biology

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volume

6

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issue

1

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page(s)

55

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

KEGG for representation and analysis of molecular networks involving diseases and drugs

20 March 2017

1 reference

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Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry

20 March 2017

1 reference

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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

20 March 2017

1 reference

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ChEBI: a database and ontology for chemical entities of biological interest

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

20 March 2017

1 reference

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

20 March 2017

1 reference

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Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

20 March 2017

1 reference

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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

20 March 2017

1 reference

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Epistatic interaction maps relative to multiple metabolic phenotypes

20 March 2017

1 reference

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Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Further developments towards a genome-scale metabolic model of yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Reconstruction of biochemical networks in microorganisms

20 March 2017

1 reference

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Genome-scale models of microbial cells: evaluating the consequences of constraints

7 April 2017

1 reference

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Dynamic epistasis for different alleles of the same gene

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Fifteen years of large scale metabolic modeling of yeast: developments and impacts

29 September 2017

1 reference

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Applications and trends in systems biology in biochemistry

29 September 2017

1 reference

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An integrated approach to characterize genetic interaction networks in yeast metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Mathematical models of cell factories: moving towards the core of industrial biotechnology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Saccharomyces Genome Database provides mutant phenotype data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Plasticity of genetic interactions in metabolic networks of yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Systematic assignment of thermodynamic constraints in metabolic network models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Energy balance for analysis of complex metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Metabolic modelling of microbes: the flux-balance approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Sterol structure and membrane function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Reconstruction annotation jamborees: a community approach to systems biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Quantitative modeling of triacylglycerol homeostasis in yeast--metabolic requirement for lipolysis to promote membrane lipid synthesis and cellular growth

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-6-55

Flux balance analysis: a geometric perspective.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-6-55

Modular epistasis in yeast metabolism.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413506

Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation

27 November 2018

1 reference

12 December 2020

Social engineering for virtual 'big science' in systems biology

1 reference

12 December 2020

SBMLToolbox: an SBML toolbox for MATLAB users

1 reference

12 December 2020

Multiple knockout analysis of genetic robustness in the yeast metabolic network

1 reference

12 December 2020

Identifiers

DOI

10.1186/1752-0509-6-55

1 reference

journals/bmcsb/HeavnerSBMW12

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1012538800

0 references

1 reference

1 reference

PubMed publication ID

22663945

1 reference