(Q27644329)

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The crystal structure of phenylpyruvate decarboxylase from Azospirillum brasilense at 1.5 A resolution. Implications for its catalytic and regulatory mechanism

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scholarly article

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28 December 2019

The crystal structure of phenylpyruvate decarboxylase from Azospirillum brasilense at 1.5 A resolution. Implications for its catalytic and regulatory mechanism (English)

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17403037%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

crystal structure

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Azospirillum brasilense

object named as

Azospirillum brasilense

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based on heuristic

inferred from title

4

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28 December 2019

1

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28 December 2019

2

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28 December 2019

author name string

Jos Vanderleyden

3

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28 December 2019

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publication date

30 March 2007

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28 December 2019

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28 December 2019

274

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28 December 2019

9

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28 December 2019

2363-2375

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28 December 2019

Transcriptional analysis of the Azospirillum brasilense indole-3-pyruvate decarboxylase gene and identification of a cis-acting sequence involved in auxin responsive expression

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Azospirillum brasilense produces the auxin-like phenylacetic acid by using the key enzyme for indole-3-acetic acid biosynthesis

1 reference

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21 January 2018

Auxin: regulation, action, and interaction.

1 reference

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21 January 2018

Identification and characterization of phenylpyruvate decarboxylase genes in Saccharomyces cerevisiae

1 reference

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21 January 2018

Studies on structure-function relationships of indolepyruvate decarboxylase from Enterobacter cloacae, a key enzyme of the indole acetic acid pathway

1 reference

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21 January 2018

The Mechanism of Substrate Activation of Pyruvate Decarboxylase: A First Approach

1 reference

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21 January 2018

New model for activation of yeast pyruvate decarboxylase by substrate consistent with the alternating sites mechanism: demonstration of the existence of two active forms of the enzyme

1 reference

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21 January 2018

Pyruvate decarboxylase from Kluyveromyces lactis. An enzyme with an extraordinary substrate activation behaviour

1 reference

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21 January 2018

Cloning and characterization of the Zymobacter palmae pyruvate decarboxylase gene (pdc) and comparison to bacterial homologues

1 reference

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21 January 2018

Structure-function relationships and flexible tetramer assembly in pyruvate decarboxylase revealed by analysis of crystal structures

1 reference

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21 January 2018

Crystal structure of thiamindiphosphate-dependent indolepyruvate decarboxylase from Enterobacter cloacae, an enzyme involved in the biosynthesis of the plant hormone indole-3-acetic acid

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Crystal structure of the thiamin diphosphate-dependent enzyme pyruvate decarboxylase from the yeast Saccharomyces cerevisiae at 2.3 A resolution

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

High resolution crystal structure of pyruvate decarboxylase from Zymomonas mobilis. Implications for substrate activation in pyruvate decarboxylases

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

The crystal structure of benzoylformate decarboxylase at 1.6 A resolution: diversity of catalytic residues in thiamin diphosphate-dependent enzymes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Structural basis for activation of the thiamin diphosphate-dependent enzyme oxalyl-CoA decarboxylase by adenosine diphosphate.

1 reference

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21 January 2018

Structure and mechanism of the ThDP-dependent benzaldehyde lyase from Pseudomonas fluorescens

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

The crystal structure of pyruvate decarboxylase from Kluyveromyces lactis. Implications for the substrate activation mechanism of this enzyme

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Structure and properties of pyruvate decarboxylase and site-directed mutagenesis of the Zymomonas mobilis enzyme.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Structural and kinetic analysis of catalysis by a thiamin diphosphate-dependent enzyme, benzoylformate decarboxylase

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Substrate activation of brewers' yeast pyruvate decarboxylase is abolished by mutation of cysteine 221 to serine.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Effects of substitution of tryptophan 412 in the substrate activation pathway of yeast pyruvate decarboxylase

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Consequences of a modified putative substrate-activation site on catalysis by yeast pyruvate decarboxylase

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Regulation of thiamin diphosphate-dependent 2-oxo acid decarboxylases by substrate and thiamin diphosphate.Mg(II) - evidence for tertiary and quaternary interactions.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Multiple modes of active center communication in thiamin diphosphate-dependent enzymes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Direct kinetic evidence for half-of-the-sites reactivity in the E1 component of the human pyruvate dehydrogenase multienzyme complex through alternating sites cofactor activation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

A molecular switch and proton wire synchronize the active sites in thiamine enzymes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Spectroscopic evidence for participation of the 1',4'-imino tautomer of thiamin diphosphate in catalysis by yeast pyruvate decarboxylase

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Dual Catalytic Apparatus of the Thiamin Diphosphate Coenzyme: Acid−Base via the 1‘,4‘-Iminopyrimidine Tautomer along with Its Electrophilic Role

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

A common structural motif in thiamin pyrophosphate-binding enzymes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Current mechanistic understanding of thiamin diphosphate-dependent enzymatic reactions

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

The catalytic cycle of a thiamin diphosphate enzyme examined by cryocrystallography.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

A thiamin-bound, pre-decarboxylation reaction intermediate analogue in the pyruvate dehydrogenase E1 subunit induces large scale disorder-to-order transformations in the enzyme and reveals novel structural features in the covalently bound adduct

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Experimental observation of thiamin diphosphate-bound intermediates on enzymes and mechanistic information derived from these observations

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Intermediates and transition states in thiamin diphosphate-dependent decarboxylases. A kinetic and NMR study on wild-type indolepyruvate decarboxylase and variants using indolepyruvate, benzoylformate, and pyruvate as substrates

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Evidence for dramatic acceleration of a C-H bond ionization rate in thiamin diphosphate enzymes by the protein environment

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Tetrahedral intermediates in thiamin diphosphate-dependent decarboxylations exist as a 1',4'-imino tautomeric form of the coenzyme, unlike the michaelis complex or the free coenzyme.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Automated protein model building combined with iterative structure refinement

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Touring protein fold space with Dali/FSSP

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

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21 January 2018

Molecular cloning of the gene for indolepyruvate decarboxylase from Enterobacter cloacae

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Novel tetramer assembly of pyruvate decarboxylase from brewer's yeast observed in a new crystal form

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

How Thiamin Diphosphate Is Activated in Enzymes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2007.05771.X

21 January 2018

Azospirillum brasilenseIndole-3-Acetic Acid Biosynthesis: Evidence for a Non-Tryptophan Dependent Pathway

1 reference

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21 January 2018

Identifiers

10.1111/J.1742-4658.2007.05771.X

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Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17403037%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17403037%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

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