(Q27648817)

English

NMR solution structures of the apo and peptide-inhibited human rhinovirus 3C protease (Serotype 14): structural and dynamic comparison

scientific article

In more languages

edit

Statements

instance of

scholarly article

0 references

title

NMR solution structures of the apo and peptide-inhibited human rhinovirus 3C protease (Serotype 14): structural and dynamic comparison (English)

0 references

David S Wishart

4

0 references

author name string

Trent C Bjorndahl

series ordinal

1

0 references

Lena C Andrew

series ordinal

2

0 references

Valentyna Semenchenko

series ordinal

3

0 references

language of work or name

English

0 references

publication date

13 November 2007

0 references

published in

Biochemistry

0 references

volume

46

0 references

issue

45

0 references

page(s)

12945-58

0 references

cites work

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/S0022-2836(02)00241-3

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

0 references

Accurate prediction of protein torsion angles using chemical shifts and sequence homology

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1002/MRC.1832

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

A simple method to predict protein flexibility using secondary chemical shifts

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1021/JA054842F

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 3. Structure-activity studies of ketomethylene-containing peptidomimetics

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Primary structure effects on peptide group hydrogen exchange

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Activation of human rhinovirus-14 3C protease

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Isotope effects in peptide group hydrogen exchange

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

NMR with Proteins and Nucleic Acids

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

A method for efficient isotopic labeling of recombinant proteins

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Automated combined assignment of NOESY spectra and three-dimensional protein structure determination

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 6. Structure-activity studies of orally bioavailable, 2-pyridone-containing peptidomimetics.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Identification and characterization of human rhinovirus-14 3C protease deamidation isoform

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Correlation of Backbone Amide and Aliphatic Side-Chain Resonances in 13C/15N-Enriched Proteins by Isotropic Mixing of 13C Magnetization

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Sequence and structural determinants of the interaction between the 5'-noncoding region of picornavirus RNA and rhinovirus protease 3C

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Completeness of NOEs in protein structure: a statistical analysis of NMR.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

VADAR: a web server for quantitative evaluation of protein structure quality

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKG565

Refined X-ray crystallographic structure of the poliovirus 3C gene product

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Conservation of amino acids in human rhinovirus 3C protease correlates with broad-spectrum antiviral activity of rupintrivir, a novel human rhinovirus 3C protease inhibitor.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Structure-based thermodynamic analysis of the dissociation of protein phosphatase-1 catalytic subunit and microcystin-LR docked complexes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Mutations at KFRDI and VGK domains of enterovirus 71 3C protease affect its RNA binding and proteolytic activities

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Cleavage of small peptides in vitro by human rhinovirus 14 3C protease expressed in Escherichia coli

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Comparison of the high-resolution structures of the alpha-amylase inhibitor tendamistat determined by nuclear magnetic resonance in solution and by X-ray diffraction in single crystals

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Comparison of protein structures determined by NMR in solution and by X-ray diffraction in single crystals

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Nuclear entry of poliovirus protease-polymerase precursor 3CD: implications for host cell transcription shut-off

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Hydrolysis of a series of synthetic peptide substrates by the human rhinovirus 14 3C proteinase, cloned and expressed in Escherichia coli

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

NMR View: A computer program for the visualization and analysis of NMR data

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Structure-based design of a parallel synthetic array directed toward the discovery of irreversible inhibitors of human rhinovirus 3C protease.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Errors in protein structures

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Backbone 1H, 15N and 13C assignments for the human rhinovirus 3C protease (serotype 14).

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1023/A:1023014717644

Phylogeny of the Picornaviridae and differential evolutionary divergence of picornavirus proteins

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

1H, 13C and 15N chemical shift referencing in biomolecular NMR

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Crystal structure of foot-and-mouth disease virus 3C protease. New insights into catalytic mechanism and cleavage specificity

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Identification of two anti-parallel beta-sheet conformations in the solution structure of murine epidermal growth factor by proton magnetic resonance

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Simultaneous detection of fourteen respiratory viruses in clinical specimens by two multiplex reverse transcription nested-PCR assays.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Poliovirus RNA synthesis utilizes an RNP complex formed around the 5'-end of viral RNA.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

A continuous colorimetric assay for rhinovirus-14 3C protease using peptide p-nitroanilides as substrates

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

The Xplor-NIH NMR molecular structure determination package

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Structure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

A consensus sequence for substrate hydrolysis by rhinovirus 3C proteinase

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Acute respiratory symptoms in adults in general practice

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/BI7010866

Identifiers

DOI

10.1021/BI7010866

0 references

PubMed publication ID

17944485

0 references

(Q27648817)

NMR solution structures of the apo and peptide-inhibited human rhinovirus 3C protease (Serotype 14): structural and dynamic comparison

Statements

Identifiers

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)