(Q27658949)

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Differential stability of 2'F-ANARNA and ANARNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20071751%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20071751%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Jonathan K Watts

1

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Europe PubMed Central

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16 January 2020

Jeremy Schwartzentruber

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20071751%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Guillem Portella

5

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Europe PubMed Central

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16 January 2020

Carlos González

7

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Europe PubMed Central

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16 January 2020

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Modesto Orozco

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16 January 2020

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Nerea Martín-Pintado

2

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16 January 2020

Irene Gómez-Pinto

3

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16 January 2020

Masad J Damha

8

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16 January 2020

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13 January 2010

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16 January 2020

Nucleic Acids Research

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16 January 2020

38

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16 January 2020

7

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16 January 2020

2498-2511

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Europe PubMed Central

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16 January 2020

Interplay of Structure, Hydration and Thermal Stability in Formacetal Modified Oligonucleotides: RNA May Tolerate Nonionic Modifications Better than DNA

1 reference

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20 March 2017

Pairing Geometry of the Hydrophobic Thymine Analogue 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

RNA hydration: a detailed look

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

20 March 2017

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

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20 March 2017

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

1 reference

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20 March 2017

Potential anti-AIDS drugs. Lipophilic, adenosine deaminase-activated prodrugs

1 reference

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20 March 2017

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

1 reference

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7 April 2017

Canonical sampling through velocity rescaling

1 reference

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7 April 2017

Thermodynamic, counterion, and hydration effects for the incorporation of locked nucleic acid nucleotides into DNA duplexes.

1 reference

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29 September 2017

2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

Hydration of short DNA, RNA and 2'-OMe oligonucleotides determined by osmotic stressing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

C-F...H-C hydrogen bonds in ribonucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

Oligonucleotides containing 9-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-adenine and -guanine: synthesis, hybridization and antisense properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

2'-Deoxy-2'-fluoro-beta-D-arabinonucleosides and oligonucleotides (2'F-ANA): synthesis and physicochemical studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

DNA structure: cations in charge?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

Thermal stability of poly(A) and poly(U) complexes in H2O and D2O: isotopic effects on critical temperatures and transition widths.

1 reference

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29 September 2017

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

29 September 2017

Structural study of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: extraction of distance and torsion angle constraints and imino proton exchange rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853132

2 June 2018

Decomposition of interaction free energies in proteins and other complex systems.

1 reference

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2 June 2018

Molecular structure of a DNA decamber containing an anticancer nucleoside arabinosylcytosine: conformational perturbation by arabinosylcytosine in B-DNA.

1 reference

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2 June 2018

The effect of 2'-fluorine substitutions on DNA i-motif conformation and stability.

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27 November 2018

Probing the nature of three-centered hydrogen bonds in minor-groove ligand-DNA interactions: the contribution of fluorine hydrogen bonds to complex stability

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27 November 2018

Probing the influence of stereoelectronic effects on the biophysical properties of oligonucleotides: comprehensive analysis of the RNA affinity, nuclease resistance, and crystal structure of ten 2'-O-ribonucleic acid modifications.

1 reference

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27 November 2018

Synthesis and biophysical properties of arabinonucleic acids (ANA): circular dichroic spectra, melting temperatures, and ribonuclease H susceptibility of ANA.RNA hybrid duplexes.

1 reference

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27 November 2018

Decomposition of the Free Energy of a System in Terms of Specific Interactions

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A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/20071751

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1 reference

https://pubmed.ncbi.nlm.nih.gov/20071751

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Nucleosides. LX. Fluorocarbohydrates. 22. Synthesis of 2-deoxy-2-fluoro-D-arabinose and 9-(2-deoxy-2-fluoro-.alpha. and .beta.-D-arabinofuranosyl)adenines

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/20071751

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10.1093/NAR/GKP1225

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Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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16 January 2020

release_xchfajrlu5bmxavp4bcbikgsau

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24 November 2022

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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16 January 2020

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Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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16 January 2020

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