(Q27661756)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

title

A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

DNA topoisomerase 2 YNL088W

2 February 2020

main subject

1 reference

GOA release 2020-03-11

author

Joseph E Deweese

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

4

Neil Osheroff

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

2

Alex B Burgin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

5

James M Berger

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

author name string

Bryan H Schmidt

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

language of work or name

English

0 references

publication date

1 June 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

volume

465

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

issue

7298

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

page(s)

641-644

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

Structural basis for gate-DNA recognition and bending by type IIA topoisomerases

2 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Mutagenesis of E477 or K505 in the B' domain of human topoisomerase II beta increases the requirement for magnesium ions during strand passage

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Crystal structure of the breakage-reunion domain of DNA gyrase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Structure and mechanism of DNA topoisomerase II

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

A general two-metal-ion mechanism for catalytic RNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

The purification and characterization of DNA topoisomerases I and II of the yeast Saccharomyces cerevisiae

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Metal ion interactions in the DNA cleavage/ligation active site of human topoisomerase IIalpha

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

The DNA cleavage reaction of topoisomerase II: wolf in sheep's clothing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Using 3'-bridging phosphorothiolates to isolate the forward DNA cleavage reaction of human topoisomerase IIalpha

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Assignment of functional amino acids around the active site of human DNA topoisomerase IIalpha

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

A novel suicide substrate for DNA topoisomerases and site-specific recombinases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Asp-to-Asn substitution at the first position of the DxD TOPRIM motif of recombinant bacterial topoisomerase I is extremely lethal to E. coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Identification of active site residues in the "GyrA" half of yeast DNA topoisomerase II.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Mechanistic studies on E. coli DNA topoisomerase I: divalent ion effects

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: a proposed two metal-ion mechanism

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882514

Yeast DNA topoisomerase II. An ATP-dependent type II topoisomerase that catalyzes the catenation, decatenation, unknotting, and relaxation of double-stranded DNA rings

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20485342

12 December 2020

inferred from PubMed ID database lookup

Inducible overexpression, purification, and active site mapping of DNA topoisomerase II from the yeast Saccharomyces cerevisiae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20485342

12 December 2020

inferred from PubMed ID database lookup

The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20485342

12 December 2020

inferred from PubMed ID database lookup

Expression and purification of soluble His(6)-tagged TEV protease

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Synthesis of phosphorothioamidites derived from 3'-thio-3'-deoxythymidine and 3'-thio-2',3'-dideoxycytidine and the automated synthesis of oligodeoxynucleotides containing a 3'-S-phosphorothiolate linkage

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Suite of three protein crystallography beamlines with single superconducting bend magnet as the source.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Phasercrystallographic software

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Coot: model-building tools for molecular graphics

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

PHENIX: building new software for automated crystallographic structure determination

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Double-stranded DNA cleavage/religation reaction of eukaryotic topoisomerase II: evidence for a nicked DNA intermediate

1 reference

https://api.crossref.org/works/10.1038%2FNATURE08974

7 January 2021

Identifiers

DOI

10.1038/NATURE08974

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20485342%20AND%20SRC:MED&resulttype=core&format=json