(Q27675280)

7

Ruth Birner-Gruenberger

0 references

Tea Pavkov-Keller

Tea Pavkov-Keller

4

0 references

Elisabeth Grohmann

Elisabeth Grohmann

10

0 references

Walter Keller

Walter Keller

11

0 references

Karl Gruber

Karl Gruber

6

0 references

author name string

Nikolaus Goessweiner-Mohr

1

0 references

Lukas Grumet

2

0 references

Karsten Arends

3

0 references

Christian C Gruber

5

0 references

Andrea Kropec-Huebner

8

0 references

Johannes Huebner

Journal of Biological Chemistry

9

0 references

language of work or name

English

0 references

publication date

18 January 2013

0 references

published in

0 references

volume

288

0 references

issue

3

0 references

page(s)

2018-28

0 references

describes a project that uses

PyMOL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=PMC3548508

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Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system

20 March 2017

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The conjugation protein TcpC from Clostridium perfringens is structurally related to the type IV secretion system protein VirB8 from Gram-negative bacteria

20 March 2017

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Structure of the outer membrane complex of a type IV secretion system

20 March 2017

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Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101

20 March 2017

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VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion

20 March 2017

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The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase

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20 March 2017

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Dali server: conservation mapping in 3D

20 March 2017

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Features and development of Coot

20 March 2017

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Inference of macromolecular assemblies from crystalline state

20 March 2017

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Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

20 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

20 March 2017

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Protein secondary structure prediction based on position-specific scoring matrices

20 March 2017

1 reference

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VMD: visual molecular dynamics

20 March 2017

1 reference

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Predicting coiled coils from protein sequences

20 March 2017

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The HMMTOP transmembrane topology prediction server

20 March 2017

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A single amino acid change in the transmembrane domain of the VirB8 protein affects dimerization, interaction with VirB10 and Brucella suis virulence

20 March 2017

1 reference

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Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Canonical sampling through velocity rescaling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

SOSUI: classification and secondary structure prediction system for membrane proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

MultiCoil: a program for predicting two- and three-stranded coiled coils

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Combining evolutionary information and neural networks to predict protein secondary structure

7 April 2017

1 reference

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Surface organelles assembled by secretion systems of Gram-negative bacteria: diversity in structure and function

7 April 2017

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Type IV secretion system core component VirB8 from Brucella binds to the globular domain of VirB5 and to a periplasmic domain of VirB6.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Assembly and mechanisms of bacterial type IV secretion machines

29 September 2017

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GI-type T4SS-mediated horizontal transfer of the 89K pathogenicity island in epidemic Streptococcus suis serotype 2.

29 September 2017

1 reference

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29 September 2017

Mobility of plasmids.

1 reference

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Type IV secretion systems: versatility and diversity in function

29 September 2017

1 reference

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Agrobacterium tumefaciens type IV secretion protein VirB3 is an inner membrane protein and requires VirB4, VirB7, and VirB8 for stabilization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Phylogenomics reveals a diverse Rickettsiales type IV secretion system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Architecture of peptidoglycan: more data and more models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Biological diversity of prokaryotic type IV secretion systems.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Transmembrane protein topology prediction using support vector machines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

The putative coupling protein TcpA interacts with other pCW3-encoded proteins to form an essential part of the conjugation complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Exposing plasmids as the Achilles' heel of drug-resistant bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

MemBrain: improving the accuracy of predicting transmembrane helices

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Enterococcus faecalis PcfC, a spatially localized substrate receptor for type IV secretion of the pCF10 transfer intermediate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

TcpA, an FtsK/SpoIIIE homolog, is essential for transfer of the conjugative plasmid pCW3 in Clostridium perfringens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

VirB8: a conserved type IV secretion system assembly factor and drug target

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Agrobacterium tumefaciens VirB8 structure reveals potential protein-protein interaction sites.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Coevolution between nonhomologous but functionally similar proteins and their conserved partners in the Legionella pathogenesis system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Structures of two core subunits of the bacterial type IV secretion system, VirB8 from Brucella suis and ComB10 from Helicobacter pylori

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Exploring the helix-coil transition via all-atom equilibrium ensemble simulations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

TraA and its N-terminal relaxase domain of the Gram-positive plasmid pIP501 show specific oriT binding and behave as dimers in solution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Coupling factors in macromolecular type-IV secretion machineries

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

MASS: multiple structural alignment by secondary structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

MATRAS: A program for protein 3D structure comparison

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Type IV transporters of pathogenic bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Bacterial conjugation: a two-step mechanism for DNA transport

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Cell-associated pheromone peptide (cCF10) production and pheromone inhibition in Enterococcus faecalis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

A model recognition approach to the prediction of all-helical membrane protein structure and topology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Transcription of Ti plasmid-derived sequences in three octopine-type crown gall tumor lines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Conjugative R plasmids in Streptococcus agalactiae (group B)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

A type IV-secretion-like system is required for conjugative DNA transport of broad-host-range plasmid pIP501 in gram-positive bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

The MPI Bioinformatics Toolkit for protein sequence analysis

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Energetic components VirD4, VirB11 and VirB4 mediate early DNA transfer reactions required for bacterial type IV secretion.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

Intergeneric transfer of the Enterococcus faecalis plasmid pIP501 to Escherichia coli and Streptomyces lividans and sequence analysis of its tra region.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548508

The TraA relaxase autoregulates the putative type IV secretion-like system encoded by the broad-host-range Streptococcus agalactiae plasmid pIP501.

2 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

Paircoil2: improved prediction of coiled coils from sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

A modified TIP3P water potential for simulation with Ewald summation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

Crystal contacts as nature's docking solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

A Large Domain Swap in the VirB11 ATPase of Brucella suis Leaves the Hexameric Assembly Intact

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

Plasmid-mediated horizontal gene transfer is a coevolutionary process.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.428847

Subcellular localization of the Agrobacterium tumefaciens T-DNA transport pore proteins: VirB8 is essential for the assembly of the transport pore

21 January 2018

1 reference

12 December 2020

Comparative protein structure modeling using Modeller

1 reference

12 December 2020

Quantitative analysis of VirB8-VirB9-VirB10 interactions provides a dynamic model of type IV secretion system core complex assembly

1 reference

12 December 2020

Protection against Staphylococcus aureus by antibody to the polyglycerolphosphate backbone of heterologous lipoteichoic acid

1 reference

12 December 2020

Disarming bacterial type IV secretion

1 reference

12 December 2020

bcl::Cluster : A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System

1 reference

12 December 2020

Surface and electrostatics of cutinases

1 reference

12 December 2020