(Q27675853)

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Structural, Biochemical, and Computational Characterization of the Glycoside Hydrolase Family 7 Cellobiohydrolase of the Tree-killing Fungus Heterobasidion irregulare

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Structural, Biochemical, and Computational Characterization of the Glycoside Hydrolase Family 7 Cellobiohydrolase of the Tree-killing Fungus Heterobasidion irregulare (English)

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computational biology

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Heterobasidion irregulare

object named as

Heterobasidion irregulare

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based on heuristic

inferred from title

Christina Payne

2

object named as

Christina M Payne

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object named as

Henrik Hansson

3

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Jerry Ståhlberg

object named as

Jerry Ståhlberg

9

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object named as

Mats Sandgren

7

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Nils Egil Mikkelsen

4

object named as

Nils Egil Mikkelsen

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Majid Haddad Momeni

1

object named as

Majid Haddad Momeni

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Gregg T. Beckham

8

object named as

Gregg T Beckham

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author name string

Jesper Svedberg

5

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Åke Engström

6

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language of work or name

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publication date

22 February 2013

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Journal of Biological Chemistry

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288

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8

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5861-72

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Joint X-ray crystallographic and molecular dynamics study of cellobiohydrolase I from Trichoderma harzianum: deciphering the structural features of cellobiohydrolase catalytic activity

1 reference

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20 March 2017

Hallmarks of Processivity in Glycoside Hydrolases from Crystallographic and Computational Studies of the Serratia marcescens Chitinases

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20 March 2017

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

1 reference

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20 March 2017

Crystal structures ofMelanocarpus albomycescellobiohydrolase Cel7B in complex with cello-oligomers show high flexibility in the substrate binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

20 March 2017

Engineering the exo-loop of Trichoderma reesei cellobiohydrolase, Cel7A. A comparison with Phanerochaete chrysosporium Cel7D

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

20 March 2017

Microbial cellulose utilization: fundamentals and biotechnology

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20 March 2017

Family 7 cellobiohydrolases from Phanerochaete chrysosporium: crystal structure of the catalytic module of Cel7D (CBH58) at 1.32 A resolution and homology models of the isozymes

1 reference

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20 March 2017

Structure of a two-domain chitotriosidase from Serratia marcescens at 1.9-A resolution

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20 March 2017

Crystal structure of the family 7 endoglucanase I (Cel7B) from Humicola insolens at 2.2 A resolution and identification of the catalytic nucleophile by trapping of the covalent glycosyl-enzyme intermediate

1 reference

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20 March 2017

High-resolution crystal structures reveal how a cellulose chain is bound in the 50 A long tunnel of cellobiohydrolase I from Trichoderma reesei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

20 March 2017

The crystal structure of the catalytic core domain of endoglucanase I from Trichoderma reesei at 3.6 A resolution, and a comparison with related enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

20 March 2017

Structure of the Fusarium oxysporum endoglucanase I with a nonhydrolyzable substrate analogue: substrate distortion gives rise to the preferred axial orientation for the leaving group

1 reference

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20 March 2017

Activity studies and crystal structures of catalytically deficient mutants of cellobiohydrolase I from Trichoderma reesei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

20 March 2017

The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei

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20 March 2017

REFMAC5 for the refinement of macromolecular crystal structures

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20 March 2017

Phasercrystallographic software

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20 March 2017

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20 March 2017

The CCP4 suite: programs for protein crystallography

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20 March 2017

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20 March 2017

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

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20 March 2017

Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes

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20 March 2017

Biomass recalcitrance: engineering plants and enzymes for biofuels production

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

7 April 2017

Cellulase linkers are optimized based on domain type and function: insights from sequence analysis, biophysical measurements, and molecular simulation

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29 September 2017

Novel enzymes for the degradation of cellulose

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29 September 2017

Substrate-specific transcription of the enigmatic GH61 family of the pathogenic white-rot fungus Heterobasidion irregulare during growth on lignocellulose

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29 September 2017

Product binding varies dramatically between processive and nonprocessive cellulase enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

29 September 2017

Binding preferences, surface attachment, diffusivity, and orientation of a family 1 carbohydrate-binding module on cellulose

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29 September 2017

Deconstruction of lignocellulosic biomass to fuels and chemicals

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29 September 2017

Genome analyses highlight the different biological roles of cellulases

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29 September 2017

Computational investigation of glycosylation effects on a family 1 carbohydrate-binding module

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29 September 2017

The genome portal of the Department of Energy Joint Genome Institute

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29 September 2017

Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation

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29 September 2017

Probing carbohydrate product expulsion from a processive cellulase with multiple absolute binding free energy methods

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29 September 2017

Applications of computational science for understanding enzymatic deconstruction of cellulose

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29 September 2017

The O-glycosylated linker from the Trichoderma reesei Family 7 cellulase is a flexible, disordered protein

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581431

29 September 2017

High speed atomic force microscopy visualizes processive movement of Trichoderma reesei cellobiohydrolase I on crystalline cellulose

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29 September 2017

Costs and benefits of processivity in enzymatic degradation of recalcitrant polysaccharides.

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29 September 2017

Endo/exo mechanism and processivity of family 18 chitinases produced by Serratia marcescens

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29 September 2017

Structures of Phanerochaete chrysosporium Cel7D in complex with product and inhibitors

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29 September 2017

Imaging the enzymatic digestion of bacterial cellulose ribbons reveals the endo character of the cellobiohydrolase Cel6A from Humicola insolens and its mode of synergy with cellobiohydrolase Cel7A.

1 reference

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29 September 2017

Tryptophan 272: an essential determinant of crystalline cellulose degradation by Trichoderma reesei cellobiohydrolase Cel6A.

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29 September 2017

Regulation of cellulase gene expression in the filamentous fungus Trichoderma reesei

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29 September 2017

Endo-exo synergism in cellulose hydrolysis revisited.

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2 June 2018

Pre-steady-state kinetics for hydrolysis of insoluble cellulose by cellobiohydrolase Cel7A.

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2 June 2018

Processivity of cellobiohydrolases is limited by the substrate.

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2 June 2018

The energy landscape for the interaction of the family 1 carbohydrate-binding module and the cellulose surface is altered by hydrolyzed glycosidic bonds.

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2 June 2018

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

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21 January 2018

Factors influencing glycosylation of Trichoderma reesei cellulases. I: Postsecretorial changes of the O- and N-glycosylation pattern of Cel7A.

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21 January 2018

Three-dimensional structure of a thermostable native cellobiohydrolase, CBH IB, and molecular characterization of the cel7 gene from the filamentous fungus, Talaromyces emersonii

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21 January 2018

Identification of amino acids responsible for processivity in a Family 1 carbohydrate-binding module from a fungal cellulase

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21 January 2018

Initial- and processive-cut products reveal cellobiohydrolase rate limitations and the role of companion enzymes.

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21 January 2018

Inhibition of the Trichoderma reesei cellulases by cellobiose is strongly dependent on the nature of the substrate.

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21 January 2018

Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft

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21 January 2018

Mechanism of initial rapid rate retardation in cellobiohydrolase catalyzed cellulose hydrolysis

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12 December 2020

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The 1,4-beta-D-glucan cellobiohydrolases from Phanerochaete chrysosporium. I. A system of synergistically acting enzymes homologous to Trichoderma reesei

1 reference

https://pubmed.ncbi.nlm.nih.gov/23303184

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Traffic jams reduce hydrolytic efficiency of cellulase on cellulose surface

1 reference

https://pubmed.ncbi.nlm.nih.gov/23303184

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular-level origins of biomass recalcitrance: decrystallization free energies for four common cellulose polymorphs

1 reference

https://pubmed.ncbi.nlm.nih.gov/23303184

12 December 2020

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inferred from PubMed ID database lookup

Evidence that cellobiose oxidase from Phanerochaete chrysosporium is primarily an Fe(III) reductase. Kinetic comparison with neutrophil NADPH oxidase and yeast flavocytochrome b2

1 reference

https://pubmed.ncbi.nlm.nih.gov/23303184

12 December 2020

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Modified glycosylation of cellobiohydrolase I from a high cellulase-producing mutant strain of Trichoderma reesei

1 reference

https://pubmed.ncbi.nlm.nih.gov/23303184

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Trichoderma reesei has no true exo-cellulase: all intact and truncated cellulases produce new reducing end groups on cellulose

1 reference

https://pubmed.ncbi.nlm.nih.gov/23303184

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1074/JBC.M112.440891

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https://api.fatcat.wiki/v0/release/ve3nrktnxnfnpdvfvh557ggxni

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