(Q27680006)

9

0 references

Bridget Carragher

object named as

Bridget Carragher

8

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author name string

Dmitry Lyumkis

1

0 references

Heather Talley

2

0 references

Andrew Stewart

3

0 references

Santosh Shah

4

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Chad K Park

5

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Clinton S Potter

describes a project that uses

7

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publication date

8 October 2013

0 references

published in

Structure

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volume

21

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issue

10

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page(s)

1848-58

0 references

ImageQuant

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3898938/fullTextXML

inferred from PubMed Central ID database lookup

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3898938/fullTextXML

inferred from PubMed Central ID database lookup

cites work

New clues in the allosteric activation of DNA cleavage bySgrAI: structures ofSgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA

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Domain Swapping in Allosteric Modulation of DNA Specificity

20 March 2017

1 reference

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Identification of novel filament-forming proteins in Saccharomyces cerevisiae and Drosophila melanogaster

20 March 2017

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The metabolic enzyme CTP synthase forms cytoskeletal filaments

20 March 2017

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REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

20 March 2017

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Structural plasticity in actin and tubulin polymer dynamics

20 March 2017

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The unfolded protein response signals through high-order assembly of Ire1

20 March 2017

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The structure of SgrAI bound to DNA; recognition of an 8 base pair target

20 March 2017

1 reference

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Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures

20 March 2017

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High-resolution Electron Microscopy of Helical Specimens: A Fresh Look at Tobacco Mosaic Virus

20 March 2017

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A mechanistic model of the actin cycle

20 March 2017

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Structure and function of type II restriction endonucleases

20 March 2017

1 reference

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Electrostatics of nanosystems: application to microtubules and the ribosome

20 March 2017

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UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

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SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

20 March 2017

1 reference

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A new generation of the IMAGIC image processing system

20 March 2017

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Bimodal activation of acetyl-CoA carboxylase by glutamate

20 March 2017

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The phage-host arms race: shaping the evolution of microbes

20 March 2017

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Regulation of acetyl-CoA carboxylase

20 March 2017

2 references

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20 March 2017

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Appion: an integrated, database-driven pipeline to facilitate EM image processing

7 April 2017

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Automated molecular microscopy: the new Leginon system

7 April 2017

1 reference

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FREALIGN: high-resolution refinement of single particle structures

7 April 2017

1 reference

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Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase.

24 May 2017

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Movies of ice-embedded particles enhance resolution in electron cryo-microscopy

29 September 2017

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Iterative stable alignment and clustering of 2D transmission electron microscope images

29 September 2017

1 reference

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Real-space processing of helical filaments in SPARX.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Activation of DNA cleavage by oligomerization of DNA-bound SgrAI

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

DNA curvature and flexibility in vitro and in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

A clustering approach to multireference alignment of single-particle projections in electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Quantitative genome-scale analysis of protein localization in an asymmetric bacterium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Reversible compartmentalization of de novo purine biosynthetic complexes in living cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

SPARX, a new environment for Cryo-EM image processing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

ACE: automated CTF estimation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Type II restriction endonucleases: structure and mechanism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Noise bias in the refinement of structures derived from single particles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Reactions of type II restriction endonucleases with 8-base pair recognition sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Recognition and cleavage of DNA by type-II restriction endonucleases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

SgrAI, a novel class-II restriction endonuclease from Streptomyces griseus recognizing the octanucleotide sequence 5'-CR/CCGGYG-3' [corrected]

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Catalytic roles of divalent metal ions in phosphoryl transfer by EcoRV endonuclease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Structural analysis of activated SgrAI-DNA oligomers using ion mobility mass spectrometry.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAI.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

FindEM--a fast, efficient program for automatic selection of particles from electron micrographs

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Subunit assembly for DNA cleavage by restriction endonuclease SgrAI.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3898938

Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets

27 November 2018

1 reference

12 December 2020

A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli

1 reference

12 December 2020

NotI and SfiI: restriction endonucleases with octanucleotide recognition sequences

1 reference

12 December 2020

Studies on the mechnism of activation of acetyl coenzyme A carboxylase by citrate

1 reference

12 December 2020