(Q27684090)

7

0 references

Shun-ichi Sekine

8

Shun-Ichi Sekine

0 references

Naoki Shigi

Naoki Shigi

9

0 references

Takuhiro Ito

Takuhiro Ito

4

0 references

Shigeyuki Yokoyama

Shigeyuki Yokoyama

10

0 references

Takaho Terada

6

Takaho Terada

0 references

Kazushige Katsura

5

Kazushige Katsura

0 references

Mitsuo Kuratani

2

Mitsuo Kuratani

0 references

author name string

Hirofumi Nakagawa

1

0 references

Sakurako Goto-Ito

The RNA Modification Database, RNAMDB: 2011 update

3

0 references

language of work or name

English

0 references

publication date

July 2013

0 references

published in

Proteins

0 references

volume

81

0 references

issue

7

0 references

page(s)

1232-44

0 references

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

tRNA stabilization by modified nucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

tRNA's modifications bring order to gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

tRNA's wobble decoding of the genome: 40 years of modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Orientation of the tRNA anticodon in the ribosomal P-site: quantitative footprinting with U33-modified, anticodon stem and loop domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Improvement of reading frame maintenance is a common function for several tRNA modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Human tRNALys3UUU Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto–Enol Tautomerism

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Modification of the universally unmodified uridine-33 in a mitochondria-imported edited tRNA and the role of the anticodon arm structure on editing efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Thiolation controls cytoplasmic tRNA stability and acts as a negative determinant for tRNA editing in mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

The conserved Cys-X1-X2-Cys motif present in the TtcA protein is required for the thiolation of cytidine in position 32 of tRNA from Salmonella enterica serovar Typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Replacement of ribothymidine by 5-methyl-2-thiouridine in sequence GT psi C in tRNA of an extreme thermophile.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Structure of yeast phenylalanine tRNA at 3 Å resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Heat-induced stability of tRNA from an extreme thermophile, Thermus thermophilus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Mitochondria-specific RNA-modifying enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

A P-loop-like motif in a widespread ATP pyrophosphatase domain: implications for the evolution of sequence motifs and enzyme activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Evidence that ThiI, an enzyme shared between thiamin and 4-thiouridine biosynthesis, may be a sulfurtransferase that proceeds through a persulfide intermediate

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

PHENIX: a comprehensive Python-based system for macromolecular structure solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Features and development of Coot

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Engineering a selectable marker for hyperthermophiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Posttranslational modification of cellular proteins by a ubiquitin-like protein in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Structural basis of the initial binding of tRNA(Ile) lysidine synthetase TilS with ATP and L-lysine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Snapshots of tRNA sulphuration via an adenylated intermediate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Zinc finger proteins: getting a grip on RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273

Multiple modes of RNA recognition by zinc finger proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24273