(Q27696542)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Visualizing phosphodiester-bond hydrolysis by an endonuclease (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Stefano Stella

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Pilar Redondo

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Hansel Gómez

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Maria J Marcaida

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

6

Modesto Orozco

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

author name string

Jesús Prieto

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Guillermo Montoya

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

publication date

8 December 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

Nature Structural & Molecular Biology

24 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

volume

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

page(s)

65-72

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

How restriction enzymes became the workhorses of molecular biology

24 February 2020

cites work

1 reference

A general two-metal-ion mechanism for catalytic RNA

20 April 2017

1 reference

Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets

20 April 2017

1 reference

Computational redesign of endonuclease DNA binding and cleavage specificity

20 April 2017

1 reference

Homing endonuclease I-CreI derivatives with novel DNA target specificities

20 April 2017

1 reference

Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus

20 April 2017

1 reference

Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases

20 April 2017

1 reference

Tapping natural reservoirs of homing endonucleases for targeted gene modification

20 April 2017

1 reference

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

20 April 2017

1 reference

Crystal structure of I-DmoI in complex with its target DNA provides new insights into meganuclease engineering

20 April 2017

1 reference

Structural and biochemical analyses of DNA and RNA binding by a bifunctional homing endonuclease and group I intron splicing factor

20 April 2017

1 reference

The crystal structure of the gene targeting homing endonuclease I-SceI reveals the origins of its target site specificity

20 April 2017

1 reference

Observing a DNA Polymerase Choose Right from Wrong

20 April 2017

1 reference

Watching DNA polymerase η make a phosphodiester bond

20 April 2017

1 reference

Design, activity, and structure of a highly specific artificial endonuclease

20 April 2017

1 reference

Crystal structures of I-SceI complexed to nicked DNA substrates: snapshots of intermediates along the DNA cleavage reaction pathway

20 April 2017

1 reference

Direct structural observation of an acyl-enzyme intermediate in the hydrolysis of an ester substrate by elastase

20 April 2017

1 reference

Capture and visualization of a catalytic RNA enzyme-product complex using crystal lattice trapping and X-ray holographic reconstruction

20 April 2017

1 reference

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

20 April 2017

1 reference

20 April 2017

1 reference

Scaling and assessment of data quality

20 April 2017

1 reference

Phasercrystallographic software

20 April 2017

1 reference

Coot: model-building tools for molecular graphics

20 April 2017

1 reference

PHENIX: a comprehensive Python-based system for macromolecular structure solution

20 April 2017

1 reference

H++: a server for estimating pKas and adding missing hydrogens to macromolecules

20 April 2017

1 reference

Electronic structure calculations on workstation computers: The program system turbomole

20 April 2017

1 reference

Density-functional exchange-energy approximation with correct asymptotic behavior

20 April 2017

1 reference

A new mixing of Hartree–Fock and local density‐functional theories

20 April 2017

1 reference

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

20 April 2017

1 reference

Electrostatics of nanosystems: application to microtubules and the ribosome

20 April 2017

1 reference

Comparison of multiple Amber force fields and development of improved protein backbone parameters

20 April 2017

1 reference

VMD: visual molecular dynamics

20 April 2017

1 reference

Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

20 April 2017

1 reference

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

20 April 2017

1 reference

Exploring protein native states and large-scale conformational changes with a modified generalized born model

20 April 2017

1 reference

On the Divalent Metal Ion Dependence of DNA Cleavage by Restriction Endonucleases of the EcoRI Family

20 April 2017

1 reference

Nucleases: diversity of structure, function and mechanism.

21 January 2018

1 reference

Homing endonucleases: from basics to therapeutic applications.

21 January 2018

1 reference

Homing endonuclease structure and function

21 January 2018

1 reference

Directed evolution of homing endonuclease I-SceI with altered sequence specificity

21 January 2018

1 reference

A site-specific endonuclease encoded by a typical archaeal intron

21 January 2018

1 reference

Metal-dependent DNA cleavage mechanism of the I-CreI LAGLIDADG homing endonuclease

21 January 2018

1 reference

Generation and analysis of mesophilic variants of the thermostable archaeal I-DmoI homing endonuclease

21 January 2018

1 reference

Observations on catalysis by hammerhead ribozymes are consistent with a two-divalent-metal-ion mechanism

21 January 2018

1 reference

Phosphate mono- and diesterase activities of the trinuclear zinc enzyme nuclease P1--insights from quantum chemical calculations.

21 January 2018

1 reference

Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV

21 January 2018

1 reference

Classical molecular interaction potentials: improved setup procedure in molecular dynamics simulations of proteins.

21 January 2018

1 reference

PELE: Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique.

21 January 2018

1 reference

Retaining Glycosyltransferase Mechanism Studied by QM/MM Methods: Lipopolysaccharyl-α-1,4-galactosyltransferase C Transfers α-Galactose via an Oxocarbenium Ion-like Transition State

21 January 2018

1 reference

Substrate-assisted and nucleophilically assisted catalysis in bovine α1,3-galactosyltransferase. Mechanistic implications for retaining glycosyltransferases.

21 January 2018

1 reference

A computational and experimental study of O-glycosylation. Catalysis by human UDP-GalNAc polypeptide:GalNAc transferase-T2

21 January 2018

1 reference

Catalytic mechanism of RNA backbone cleavage by ribonuclease H from quantum mechanics/molecular mechanics simulations

21 January 2018

1 reference

Phosphodiester cleavage in ribonuclease H occurs via an associative two-metal-aided catalytic mechanism.

21 January 2018

1 reference

Direct crystallographic observation of an acyl-enzyme intermediate in the elastase-catalyzed hydrolysis of a peptidyl ester substrate: Exploiting the "glass transition" in protein dynamics

21 January 2018

1 reference

Crystallization and preliminary X-ray diffraction analysis on the homing endonuclease I-Dmo-I in complex with its target DNA.

21 January 2018

1 reference

The EcoRI restriction endonuclease with bacteriophage lambda DNA. Kinetic studies

21 January 2018

1 reference

A simple clustering algorithm can be accurate enough for use in calculations of pKs in macromolecules

21 January 2018

1 reference

H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations

21 January 2018

1 reference

QUASI: A general purpose implementation of the QM/MM approach and its application to problems in catalysis

21 January 2018

1 reference

DL_POLY_2.0: a general-purpose parallel molecular dynamics simulation package.

21 January 2018

1 reference

Hybrid Models for Combined Quantum Mechanical and Molecular Mechanical Approaches

21 January 2018

1 reference

Computer simulation of zeolite structure and reactivity using embedded cluster methods

21 January 2018

1 reference

Updating quasi-Newton matrices with limited storage

21 January 2018

1 reference

Linear scaling geometry optimisation and transition state search in hybrid delocalised internal coordinates

21 January 2018

1 reference

Substrate diffusion and oxidation in GMC oxidoreductases: an experimental and computational study on fungal aryl-alcohol oxidase.

21 January 2018

1 reference

An atomistic view on human hemoglobin carbon monoxide migration processes.

21 January 2018

1 reference

Single vs. multiple ligand pathways in globins: a computational view.

21 January 2018

1 reference

Comparative analysis of inner cavities and ligand migration in non-symbiotic AHb1 and AHb2.

21 January 2018

1 reference

An intron in the 23S ribosomal RNA gene of the archaebacterium Desulfurococcus mobilis

21 January 2018

1 reference

Atomistic details of the associative phosphodiester cleavage in human ribonuclease H

21 January 2018

1 reference

Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields

31 March 2020

1 reference

Atomic picture of ligand migration in toluene 4-monooxygenase

31 March 2020

1 reference

Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonuclease encoded by an archaeal intron.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25486305

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Oxygen Chiral Phosphate Esters

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25486305

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An intron in the 23S ribosomal gene of the archaebacterium Desulfurococcus mobilis.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25486305

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.2932

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

24 February 2020

1014612733

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486305%20AND%20SRC:MED&resulttype=core&format=json