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Nascent transcript sequencing visualizes transcription at nucleotide resolution
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scholarly article
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stated in
PubMed
PubMed ID
21248844
retrieved
1 December 2016
title
Nascent transcript sequencing visualizes transcription at nucleotide resolution
(English)
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stated in
PubMed
PubMed ID
21248844
retrieved
1 December 2016
main subject
Histone methyltransferase SET2 YJL168C
1 reference
stated in
GOA release 2020-03-11
Rco1p YMR075W
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stated in
GOA release 2020-03-11
Eaf3p YPR023C
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stated in
GOA release 2020-03-11
author
Jonathan Weissman
series ordinal
2
object named as
Jonathan S Weissman
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author name string
L Stirling Churchman
series ordinal
1
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language of work or name
English
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publication date
20 January 2011
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published in
Nature
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stated in
PubMed
PubMed ID
21248844
retrieved
1 December 2016
volume
469
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issue
7330
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page(s)
368-73
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cites work
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The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain
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The role of chromatin during transcription
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Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.
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Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
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PubMed Central
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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
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20 March 2017
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
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The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
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Pre-mRNA processing reaches back to transcription and ahead to translation
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Bidirectional promoters generate pervasive transcription in yeast
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PubMed Central
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Divergent transcription from active promoters
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PubMed Central
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7 April 2017
Genome-wide map of nucleosome acetylation and methylation in yeast
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A high-resolution map of active promoters in the human genome
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Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
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Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes
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Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
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29 September 2017
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
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29 September 2017
Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.
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Divergent transcription: a new feature of active promoters
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29 September 2017
Mechanism of sequence-specific pausing of bacterial RNA polymerase
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29 September 2017
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
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The DNA-encoded nucleosome organization of a eukaryotic genome
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29 September 2017
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
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29 September 2017
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29 September 2017
TFIIS enhances transcriptional elongation through an artificial arrest site in vivo
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29 September 2017
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29 September 2017
RNA-catalysed nucleotide synthesis
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PubMed Central
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29 September 2017
Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability
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2 June 2018
Cooperation between translating ribosomes and RNA polymerase in transcription elongation
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PubMed Central
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2 June 2018
H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation
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2 June 2018
High-resolution dynamic mapping of histone-DNA interactions in a nucleosome
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2 June 2018
Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci
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2 June 2018
Sequence-resolved detection of pausing by single RNA polymerase molecules.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880149
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2 June 2018
The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.
1 reference
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PubMed Central
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2 June 2018
Transcription initiation by RNA polymerase II in vitro. Properties of preinitiation, initiation, and elongation complexes.
1 reference
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2 June 2018
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE09652
retrieved
21 January 2018
The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE09652
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21 January 2018
Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21248844
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21248844
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nature of the nucleosomal barrier to RNA polymerase II
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21248844
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/NATURE09652
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
896275
Dimensions Publication ID
1045456680
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OpenCitations bibliographic resource ID
896275
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
896275
PMCID
3880149
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
896275
PubMed ID
21248844
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
896275
ResearchGate publication ID
49768620
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