(Q28749801)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

title

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

author

Alfonso Rodríguez-Gil

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

José García-Martínez

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Vicent Pelechano

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

María De La Cruz Muñoz Centeno

30 January 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

José E Pérez-Ortín

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Sebastián Chávez

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

author name string

Vincent Geli

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

language of work or name

English

0 references

publication date

12 April 2010

1 reference

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30 January 2020

published in

Nucleic Acids Research

1 reference

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30 January 2020

volume

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

issue

14

1 reference

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30 January 2020

page(s)

4651-4664

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 2.5 Generic

30 January 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions

16 March 2017

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Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5.

16 March 2017

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Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters

16 March 2017

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

16 March 2017

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Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes

16 March 2017

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Structural characterization of Set1 RNA recognition motifs and their role in histone H3 lysine 4 methylation.

16 March 2017

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Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE

16 March 2017

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The yeast Mediator complex and its regulation

16 March 2017

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A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size

16 March 2017

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Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

16 March 2017

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Molecular evidence for a positive role of Spt4 in transcription elongation

16 March 2017

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Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter

16 March 2017

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Nucleotide exchange factor for the yeast Hsp70 molecular chaperone Ssa1p

16 March 2017

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Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex

16 March 2017

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COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression

16 March 2017

1 reference

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Genetic interactions of Spt4-Spt5 and TFIIS with the RNA polymerase II CTD and CTD modifying enzymes in Saccharomyces cerevisiae

16 March 2017

1 reference

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Phosphorylation of the RNA polymerase II carboxy-terminal domain by the Bur1 cyclin-dependent kinase

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

16 March 2017

1 reference

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BUR1 and BUR2 encode a divergent cyclin-dependent kinase-cyclin complex important for transcription in vivo

16 March 2017

1 reference

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Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro

16 March 2017

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Dissecting the regulatory circuitry of a eukaryotic genome

16 March 2017

1 reference

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Promotion of met-tRNAiMet binding to ribosomes by yIF2, a bacterial IF2 homolog in yeast

16 March 2017

1 reference

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Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Ssd1p of Saccharomyces cerevisiae associates with RNA.

16 March 2017

1 reference

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Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS.

16 March 2017

1 reference

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Cdc73p and Paf1p are found in a novel RNA polymerase II-containing complex distinct from the Srbp-containing holoenzyme

16 March 2017

1 reference

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Elevated recombination rates in transcriptionally active DNA

16 March 2017

1 reference

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TM4: a free, open-source system for microarray data management and analysis

16 March 2017

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

7 April 2017

1 reference

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Preparation of high molecular weight RNA

7 April 2017

1 reference

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Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo

7 April 2017

1 reference

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High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

7 April 2017

1 reference

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Genome-wide views of chromatin structure

3 June 2018

1 reference

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Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair.

3 June 2018

1 reference

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Poised polymerases: on your mark...get set...go!

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

In vivo dynamics of RNA polymerase II transcription.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

The Sas3p and Gcn5p histone acetyltransferases are recruited to similar genes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Identification of a regulator of transcription elongation as an accessory factor for the human Mediator coactivator.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Multi-tasking on chromatin with the SAGA coactivator complexes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

The Yin and Yang of P-TEFb regulation: implications for human immunodeficiency virus gene expression and global control of cell growth and differentiation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

The multiple faces of Set1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Fine-structure analysis of ribosomal protein gene transcription

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Bur1/Bur2 and the Ctk complex in yeast: the split personality of mammalian P-TEFb

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Expanding the functional repertoire of CTD kinase I and RNA polymerase II: novel phosphoCTD-associating proteins in the yeast proteome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Global control of gene expression in yeast by the Ccr4-Not complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

High-resolution genetic mapping with ordered arrays of Saccharomyces cerevisiae deletion mutants.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Promoting elongation with transcript cleavage stimulatory factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Mapping DNA interaction sites of chromosomal proteins. Crosslinking studies in yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Genetic and physical interactions involving the yeast nuclear cap-binding complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Distinct activated and non-activated RNA polymerase II complexes in yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

RNA polymerase II subunit RPB4 is essential for high- and low-temperature yeast cell growth

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Yeast RNA polymerase II subunit RPB9 is essential for growth at temperature extremes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Regulation of IMP dehydrogenase gene expression by its end products, guanine nucleotides

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Fluctuations, pauses, and backtracking in DNA transcription

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Histone H3 lysine 4 mono-methylation does not require ubiquitination of histone H2B.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

A new set of DNA macrochips for the yeast Saccharomyces cerevisiae: features and uses.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

RNA polymerase II subunit Rpb9 regulates transcription elongation in vivo.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

Nuclear run-on assays: assessing transcription by measuring density of engaged RNA polymerases.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919717

A simple in vivo assay for measuring the efficiency of gene length-dependent processes in yeast mRNA biogenesis

27 November 2018

1 reference

12 December 2020

Fes1p acts as a nucleotide exchange factor for the ribosome-associated molecular chaperone Ssb1p

1 reference

12 December 2020

Genetic background affects relative nonsense mRNA accumulation in wild-type and upf mutant yeast strains

1 reference

12 December 2020

6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae

1 reference

12 December 2020

Function of the S. cerevisiae DST1/PPR2 gene in transcription elongation

1 reference

12 December 2020

A general suppressor of RNA polymerase I, II and III mutations in Saccharomyces cerevisiae

1 reference

12 December 2020

Nature of the nucleosomal barrier to RNA polymerase II

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ215

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

release_rke4zbshqbadzcisjqmysqgm7e

30 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rke4zbshqbadzcisjqmysqgm7e

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385590%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

1 reference