(Q27934099)

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PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

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scholarly article

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PubMed publication ID

1 December 2016

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs (English)

1 reference

PubMed publication ID

1 December 2016

Glucose-induced degradation complex subunit GID8 YMR135C

1 reference

GOA release 2020-03-11

Glucose-induced degradation complex subunit FYV10 YIL097W

1 reference

GOA release 2020-03-11

Glucose-induced degradation complex subunit VID28 YIL017C

1 reference

GOA release 2020-03-11

Glucose-induced degradation complex subunit VID24 YBR105C

1 reference

GOA release 2020-03-11

Glucose-induced degradation complex subunit VID30 YGL227W

1 reference

GOA release 2020-03-11

Ubiquitin-protein ligase RMD5 YDR255C

1 reference

GOA release 2020-03-11

protein-protein interaction

1 reference

based on heuristic

inferred from title

Jack Greenblatt

8

0 references

Marinella Gebbia

7

0 references

6

object named as

Andrew Emili

0 references

10

object named as

Nevan Krogan

0 references

author name string

Sylvain Pitre

1

0 references

Frank Dehne

2

0 references

Albert Chan

3

0 references

Jim Cheetham

4

0 references

Alex Duong

5

0 references

Mathew Jessulat

9

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Xuemei Luo

11

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Ashkan Golshani

12

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language of work or name

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publication date

27 July 2006

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BMC Bioinformatics

1 reference

PubMed publication ID

1 December 2016

7

0 references

1

0 references

365

0 references

Proteome survey reveals modularity of the yeast cell machinery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Systematic discovery of new recognition peptides mediating protein interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

PRISM: protein interactions by structural matching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Catabolite degradation of fructose-1,6-bisphosphatase in the yeast Saccharomyces cerevisiae: a genome-wide screen identifies eight novel GID genes and indicates the existence of two degradation pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Initial sequencing and comparative analysis of the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Rpg1p/Tif32p, a subunit of translation initiation factor 3, interacts with actin-associated protein Sla2p.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

A comprehensive two-hybrid analysis to explore the yeast protein interactome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

The genome sequence of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Pan1p, End3p, and S1a1p, three yeast proteins required for normal cortical actin cytoskeleton organization, associate with each other and play essential roles in cell wall morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

A generic protein purification method for protein complex characterization and proteome exploration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

The Database of Interacting Proteins: 2004 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

20 March 2017

Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

7 April 2017

MIPS: a database for genomes and protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

7 April 2017

A network of protein-protein interactions in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

9 May 2017

Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

PreSPI: a domain combination based prediction system for protein-protein interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Using the yeast two-hybrid system to identify interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Recent developments in the analysis of protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Functional genomics and proteomics: charting a multidimensional map of the yeast cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Interrogating protein interaction networks through structural biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Regulation of yeast actin cytoskeleton-regulatory complex Pan1p/Sla1p/End3p by serine/threonine kinase Prk1p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Correlated sequence-signatures as markers of protein-protein interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Predicting protein--protein interactions from primary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Proteomics to study genes and genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

29 September 2017

Predicting protein-protein interactions using signature products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

27 November 2018

Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

27 November 2018

InterPreTS: protein interaction prediction through tertiary structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

27 November 2018

The draft sequences. Comparing species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557541

27 November 2018

Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/16872538

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

What If There Are Only 30,000 Human Genes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/16872538

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bridging structural biology and genomics: assessing protein interaction data with known complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16872538

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional dissection of the yeast Cyc8–Tupl transcriptional co-repressor complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/16872538

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An interaction between Sla1p and Sla2p plays a role in regulating actin dynamics and endocytosis in budding yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/16872538

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of NOT5 that encodes a new component of the Not protein complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/16872538

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-7-365

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/bmcbi/PitreDCCDEGGJKLG06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

0 references

PubMed publication ID

1 reference

PubMed publication ID

1 December 2016

ResearchGate publication ID

0 references

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