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Tpa1p is part of an mRNP complex that influences translation termination, mRNA deadenylation, and mRNA turnover in Saccharomyces cerevisiae
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scholarly article
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PubMed
PubMed ID
16809762
retrieved
1 December 2016
title
Tpa1p is part of an mRNP complex that influences translation termination, mRNA deadenylation, and mRNA turnover in Saccharomyces cerevisiae
(English)
1 reference
stated in
PubMed
PubMed ID
16809762
retrieved
1 December 2016
main subject
cell biology
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Saccharomyces cerevisiae
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Oxidative DNA demethylase YER049W
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stated in
GOA release 2020-03-11
author name string
Kim M Keeling
series ordinal
1
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Joe Salas-Marco
series ordinal
2
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Lev Z Osherovich
series ordinal
3
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David M Bedwell
series ordinal
4
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language of work or name
English
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publication date
July 2006
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published in
Molecular and Cellular Biology
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stated in
PubMed
PubMed ID
16809762
retrieved
1 December 2016
volume
26
0 references
issue
14
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page(s)
5237-48
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cites work
Yeast poly(A)-binding protein Pab1 shuttles between the nucleus and the cytoplasm and functions in mRNA export
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PubMed Central
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Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export
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PubMed Central
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Identification of factors regulating poly(A) tail synthesis and maturation
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20 March 2017
Global analysis of protein expression in yeast
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20 March 2017
Global analysis of protein localization in budding yeast
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Translation termination factor eRF3 mediates mRNA decay through the regulation of deadenylation.
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20 March 2017
Termination of translation: interplay of mRNA, rRNAs and release factors?
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20 March 2017
The invariant uridine of stop codons contacts the conserved NIKSR loop of human eRF1 in the ribosome
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20 March 2017
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
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PubMed Central
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20 March 2017
Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase
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PubMed Central
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20 March 2017
Quality control of mRNA 3'-end processing is linked to the nuclear exosome
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Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast
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20 March 2017
The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation
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PubMed Central
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20 March 2017
The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p
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PubMed Central
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20 March 2017
The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex
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20 March 2017
The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo
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20 March 2017
Pbp1p, a factor interacting with Saccharomyces cerevisiae poly(A)-binding protein, regulates polyadenylation
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20 March 2017
The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs
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20 March 2017
Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores
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20 March 2017
PAN3 encodes a subunit of the Pab1p-dependent poly(A) nuclease in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover
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20 March 2017
Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 protein
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20 March 2017
The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity
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PubMed Central
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20 March 2017
The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
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20 March 2017
The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3'-Poly(A) tail of mRNA. Direct association of erf3/GSPT with polyadenylate-binding protein
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20 March 2017
Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover
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20 March 2017
C-terminal domains of human translation termination factors eRF1 and eRF3 mediate their in vivo interaction
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PubMed Central
reference URL
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20 March 2017
Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition
1 reference
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PubMed Central
reference URL
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20 March 2017
Subcellular localization of the yeast proteome
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PubMed Central
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7 April 2017
An essential component of the decapping enzyme required for normal rates of mRNA turnover
1 reference
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PubMed Central
reference URL
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7 April 2017
A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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7 April 2017
Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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7 April 2017
Turnover mechanisms of the stable yeast PGK1 mRNA
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PubMed Central
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7 April 2017
GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Positive and negative regulation of poly(A) nuclease
1 reference
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PubMed Central
reference URL
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29 September 2017
Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast
1 reference
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PubMed Central
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29 September 2017
Localization of nuclear retained mRNAs in Saccharomyces cerevisiae
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PubMed Central
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29 September 2017
Coupling of termination, 3' processing, and mRNA export
1 reference
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PubMed Central
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29 September 2017
Guanidine hydrochloride inhibits the generation of prion "seeds" but not prion protein aggregation in yeast.
1 reference
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PubMed Central
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29 September 2017
Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation
1 reference
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PubMed Central
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29 September 2017
An mRNA surveillance mechanism that eliminates transcripts lacking termination codons
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition
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PubMed Central
reference URL
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29 September 2017
The nuclear pore complex as a transport machine.
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PubMed Central
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29 September 2017
The role of Upf proteins in modulating the translation read-through of nonsense-containing transcripts
1 reference
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PubMed Central
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29 September 2017
Endless possibilities: translation termination and stop codon recognition
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Pre-mRNA processing factors are required for nuclear export
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Novel function of the eukaryotic polypeptide-chain releasing factor 3 (eRF3/GSPT) in the mRNA degradation pathway.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
retrieved
29 September 2017
Guanidine hydrochloride blocks a critical step in the propagation of the prion-like determinant [PSI(+)] of Saccharomyces cerevisiae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
[PSI+]: an epigenetic modulator of translation termination efficiency
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Poly(A) tail length control in Saccharomyces cerevisiae occurs by message-specific deadenylation.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Endoplasmic reticulum stress-induced mRNA splicing permits synthesis of transcription factor Hac1p/Ern4p that activates the unfolded protein response
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Premature 3'-end formation of CBP1 mRNA results in the downregulation of cytochrome b mRNA during the induction of respiration in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
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29 September 2017
Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
The translational termination signal database
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PubMed Central
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29 September 2017
Characterization of cis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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29 September 2017
Inhibition of Yeast Ribonucleic Acid Polymerases by Thiolutin
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PubMed Central
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29 September 2017
The yeast CBP1 gene produces two differentially regulated transcripts by alternative 3'-end formation
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PubMed Central
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29 September 2017
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
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PubMed Central
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29 September 2017
Conversion of omnipotent translation termination factor eRF1 into ciliate-like UGA-only unipotent eRF1.
1 reference
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PubMed Central
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2 June 2018
Yeast mRNA Poly(A) tail length control can be reconstituted in vitro in the absence of Pab1p-dependent Poly(A) nuclease activity.
1 reference
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PubMed Central
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27 November 2018
A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
retrieved
27 November 2018
The GTP-binding release factor eRF3 as a key mediator coupling translation termination to mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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27 November 2018
A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent translation
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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27 November 2018
Defects in the mRNA export factors Rat7p, Gle1p, Mex67p, and Rat8p cause hyperadenylation during 3'-end formation of nascent transcripts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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27 November 2018
Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592710
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27 November 2018
Deletion analysis of the SUP35 gene of the yeast Saccharomyces cerevisiae reveals two non-overlapping functional regions in the encoded protein
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16809762
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Assaying the polyadenylation state of mRNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16809762
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The C-terminus of eRF1 defines a functionally important domain for translation termination in Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16809762
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.02448-05
1 reference
stated in
PubMed
PubMed ID
16809762
retrieved
1 December 2016
PMCID
1592710
0 references
PubMed ID
16809762
1 reference
stated in
PubMed
PubMed ID
16809762
retrieved
1 December 2016
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