Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q27934482)
Watch
English
Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
19782036
retrieved
1 December 2016
title
Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome
(English)
1 reference
stated in
PubMed
PubMed ID
19782036
retrieved
1 December 2016
main subject
DNA-binding transcription factor RAP1 YNL216W
1 reference
stated in
GOA release 2020-03-11
author name string
R Thomas Koerber
series ordinal
1
0 references
Ho Sung Rhee
series ordinal
2
0 references
Cizhong Jiang
series ordinal
3
0 references
B Franklin Pugh
0 references
publication date
24 September 2009
0 references
published in
Molecular Cell
1 reference
stated in
PubMed
PubMed ID
19782036
retrieved
1 December 2016
volume
35
0 references
page(s)
889-902
0 references
issue
6
0 references
cites work
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
High-resolution profiling of histone methylations in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Chromatin remodeling by RSC involves ATP-dependent DNA translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Chromatin docking and exchange activity enhancement of RCC1 by histones H2A and H2B
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Structure and function of a human TAFII250 double bromodomain module
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Bromodomain factor 1 corresponds to a missing piece of yeast TFIID.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Cluster analysis and display of genome-wide expression patterns
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
RAP1 protein activates and silences transcription of mating-type genes in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Dissecting the regulatory circuitry of a eukaryotic genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
20 March 2017
Multivalent engagement of chromatin modifications by linked binding modules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
7 April 2017
RNA polymerase is poised for activation across the genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
7 April 2017
A high-resolution map of transcription in the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
9 May 2017
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Mechanisms that specify promoter nucleosome location and identity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
The RCC1 superfamily: from genes, to function, to disease.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Nucleosome organization in the Drosophila genome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
GeneTrack--a genomic data processing and visualization framework.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Domain architecture of the catalytic subunit in the ISW2-nucleosome complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
A chromatin-mediated mechanism for specification of conditional transcription factor targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Model-based analysis of tiling-arrays for ChIP-chip.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Genome-scale identification of nucleosome positions in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
The Sir proteins of Saccharomyces cerevisiae: mediators of transcriptional silencing and much more.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
Heat shock factor gains access to the yeast HSC82 promoter independently of other sequence-specific factors and antagonizes nucleosomal repression of basal and induced transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
RAP1: a protean regulator in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
29 September 2017
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
2 June 2018
Neither Reb1p nor poly(dA*T) elements are responsible for the highly specific chromatin organization at the ILV1 promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
2 June 2018
The general regulatory factor Reb1p controls basal, but not Gal4p-mediated, transcription of the GCY1 gene in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
2 June 2018
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
27 November 2018
Dynamics of Replication-Independent Histone Turnover in Budding Yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
27 November 2018
The interactions of yeast SWI/SNF and RSC with the nucleosome before and after chromatin remodeling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
27 November 2018
Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
27 November 2018
Nucleosome binding by the constitutive transcription factor Sp1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
27 November 2018
A yeast mutant, PRP20, altered in mRNA metabolism and maintenance of the nuclear structure, is defective in a gene homologous to the human gene RCC1 which is involved in the control of chromosome condensation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760215
retrieved
27 November 2018
Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19782036
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19782036
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The chromatin structure of the GAL1 promoter forms independently of Reb1p in Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19782036
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19782036
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.MOLCEL.2009.09.011
0 references
PMCID
2760215
0 references
PubMed ID
19782036
1 reference
stated in
PubMed
PubMed ID
19782036
retrieved
1 December 2016
ResearchGate publication ID
26838883
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
