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Histone H3 lysine 4 hypermethylation prevents aberrant nucleosome remodeling at the PHO5 promoter
scientific article
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instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
21646424
retrieved
1 December 2016
title
Histone H3 lysine 4 hypermethylation prevents aberrant nucleosome remodeling at the PHO5 promoter
(English)
1 reference
stated in
PubMed
PubMed ID
21646424
retrieved
1 December 2016
main subject
cell biology
0 references
Rpd3L histone deacetylase complex subunit DEP1 YAL013W
1 reference
stated in
GOA release 2020-03-11
hypermethylation
1 reference
based on heuristic
inferred from title
author name string
Shan-Shan Wang
series ordinal
1
0 references
Bo O Zhou
series ordinal
2
0 references
Jin-Qiu Zhou
series ordinal
3
0 references
language of work or name
English
0 references
publication date
August 2011
0 references
published in
Molecular and Cellular Biology
1 reference
stated in
PubMed
PubMed ID
21646424
retrieved
1 December 2016
volume
31
0 references
issue
15
0 references
page(s)
3171-81
0 references
cites work
Histone deacetylase Rpd3 antagonizes Sir2-dependent silent chromatin propagation
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Chromatin modifications and their function
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Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
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PubMed Central
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Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.
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ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
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Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
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Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
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20 March 2017
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
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PubMed Central
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Raf60, a novel component of the Rpd3 histone deacetylase complex required for Rpd3 activity in Saccharomyces cerevisiae
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20 March 2017
Effectors of lysine 4 methylation of histone H3 in Saccharomyces cerevisiae are negative regulators of PHO5 and GAL1-10.
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The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation
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Sds3 (suppressor of defective silencing 3) is an integral component of the yeast Sin3[middle dot]Rpd3 histone deacetylase complex and is required for histone deacetylase activity.
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SAP30, a novel protein conserved between human and yeast, is a component of a histone deacetylase complex
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20 March 2017
Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
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20 March 2017
A large protein complex containing the yeast Sin3p and Rpd3p transcriptional regulators
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20 March 2017
HDA1 and HDA3 are components of a yeast histone deacetylase (HDA) complex
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20 March 2017
Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex.
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20 March 2017
RNA polymerase II subunit RPB3 is an essential component of the mRNA transcription apparatus
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20 March 2017
Role of trans-activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.
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20 March 2017
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
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20 March 2017
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Chromatin Structure: A Repeating Unit of Histones and DNA
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20 March 2017
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
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7 April 2017
Bidirectional promoters generate pervasive transcription in yeast
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The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men
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7 April 2017
Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression
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7 April 2017
Histone H4-K16 acetylation controls chromatin structure and protein interactions
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7 April 2017
Genome-wide map of nucleosome acetylation and methylation in yeast
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7 April 2017
Activator-dependent p300 acetylation of chromatin in vitro: enhancement of transcription by disruption of repressive nucleosome-nucleosome interactions
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29 September 2017
In vitro reconstitution of PHO5 promoter chromatin remodeling points to a role for activator-nucleosome competition in vivo
1 reference
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PubMed Central
reference URL
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29 September 2017
Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
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PubMed Central
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29 September 2017
Crosstalk among Histone Modifications
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PubMed Central
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29 September 2017
Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation.
1 reference
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PubMed Central
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29 September 2017
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
1 reference
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PubMed Central
reference URL
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29 September 2017
Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
A role for noncoding transcription in activation of the yeast PHO5 gene
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Histone H3 Lys 4 methylation: caught in a bind?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Dynamic nucleosomes and gene transcription
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Variegation in Drosophila and the Inert Chromosome Regions
1 reference
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PubMed Central
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29 September 2017
Dynamic changes in histone H3 lysine 9 methylations: identification of a mitosis-specific function for dynamic methylation in chromosome congression and segregation
1 reference
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PubMed Central
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29 September 2017
Chromatin remodeling complexes: strength in diversity, precision through specialization
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PubMed Central
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29 September 2017
Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Recruitment of the NuA4 complex poises the PHO5 promoter for chromatin remodeling and activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Multiple Mechanistically Distinct Functions of SAGA at the PHO5 Promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
A genetic study of signaling processes for repression of PHO5 transcription in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
Regulation of phosphatase synthesis in Saccharomyces cerevisiae--a review
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
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29 September 2017
The homeodomain protein Pho2 and the basic-helix-loop-helix protein Pho4 bind DNA cooperatively at the yeast PHO5 promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
29 September 2017
Interplay between nucleosomes and transcription factors at the yeast PHO5 promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
29 September 2017
The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
29 September 2017
A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
29 September 2017
A functional role for nucleosomes in the repression of a yeast promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
29 September 2017
H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
2 June 2018
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Evidence for nucleosome depletion at active regulatory regions genome-wide
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Cti6 is an Rpd3-Sin3 histone deacetylase-associated protein required for growth under iron-limiting conditions in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Nucleosomes unfold completely at a transcriptionally active promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Pho23 is associated with the Rpd3 histone deacetylase and is required for its normal function in regulation of gene expression and silencing in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147609
retrieved
27 November 2018
Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21646424
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21646424
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A Transient Histone Hyperacetylation Signal Marks Nucleosomes for Remodeling at the PHO8 Promoter In Vivo
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21646424
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.05017-11
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
631570
OpenCitations bibliographic resource ID
631570
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
631570
PMCID
3147609
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
631570
PubMed ID
21646424
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
631570
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