(Q28263623)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

The Plasmodiophora brassicae genome reveals insights in its life cycle and ancestry of chitin synthases (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference

Plasmodiophora brassicae

object named as

Plasmodiophora brassicae

1 reference

1

1 reference

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17 February 2020

Germán Bonilla-Rosso

6

1 reference

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17 February 2020

Magnus Karlsson

7

1 reference

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17 February 2020

Vignesh Dhandapani

9

1 reference

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17 February 2020

14

Jutta Ludwig-Müller

1 reference

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17 February 2020

author name string

Johan Fogelqvist

2

1 reference

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17 February 2020

Andrea Knaust

3

1 reference

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17 February 2020

Sabine Jülke

4

1 reference

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17 February 2020

Tua Lilja

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Andrej Shevchenko

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Su Ryun Choi

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Hong Gi Kim

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Ju Young Park

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Yong Pyo Lim

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Christina Dixelius

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

language of work or name

English

0 references

publication date

18 June 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

page(s)

11153

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

17 February 2020

copyright license

start time

18 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

InterPro in 2011: new developments in the family and domain prediction database

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

ConDeTri--a content dependent read trimmer for Illumina data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Genome sequence and analysis of the tuber crop potato

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Full-length transcriptome assembly from RNA-Seq data without a reference genome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

TopHat: discovering splice junctions with RNA-Seq

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

SignalP 4.0: discriminating signal peptides from transmembrane regions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Repbase Update, a database of eukaryotic repetitive elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Scaffolding pre-assembled contigs using SSPACE

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

The battle for chitin recognition in plant-microbe interactions.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Inside plant: biotrophic strategies to modulate host immunity and metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

The others: our biased perspective of eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Cross-kingdom host shifts of phytomyxid parasites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

The genome of the foraminiferan Reticulomyxa filosa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Secretion, delivery and function of oomycete effector proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Toward almost closed genomes with GapFiller

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Gall formation in clubroot-infected Arabidopsis results from an increase in existing meristematic activities of the host but is not essential for the completion of the pathogen life cycle.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Genomics of biotrophic, plant-infecting plasmodiophorids using in vitro dual cultures.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

An NADPH-dependent genetic switch regulates plant infection by the rice blast fungus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Recount: expectation maximization based error correction tool for next generation sequencing data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Apollo: a community resource for genome annotation editing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Causes and effects of nuclear genome reduction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Evolution and phylogenetic relationships of chitin synthases from yeasts and fungi

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Characterization of the Carbohydrate Binding Module 18 gene family in the amphibian pathogen Batrachochytrium dendrobatidis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

Early divergence, broad distribution, and high diversity of animal chitin synthases

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4471660

An alternative root for the eukaryote tree of life

2 June 2018

1 reference

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

21 January 2018

1 reference

Induction of trehalase in Arabidopsis plants infected with the trehalose-producing pathogen Plasmodiophora brassicae

21 January 2018

1 reference

Transcriptome analysis of Arabidopsis clubroots indicate a key role for cytokinins in disease development.

21 January 2018

1 reference

A novel methyltransferase from the intracellular pathogen Plasmodiophora brassicae methylates salicylic acid.

21 January 2018

1 reference

Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid

21 January 2018

1 reference

Evolution of family 18 glycoside hydrolases: diversity, domain structures and phylogenetic relationships.

21 January 2018

1 reference

Moss (Physcomitrella patens) GH3 proteins act in auxin homeostasis

21 January 2018

1 reference

21 January 2018

1 reference

Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements

21 January 2018

1 reference

12 December 2020

The liverwort Marchantia foliacea forms a specialized symbiosis with arbuscular mycorrhizal fungi in the genus Glomus

1 reference

12 December 2020

Fatty acid synthesis by elongases in trypanosomes

1 reference

12 December 2020

Secretory protein with RING finger domain (SPRING) specific toTrypanosoma cruziis directed, as a ubiquitin ligase related protein, to the nucleus of host cells

1 reference

12 December 2020

Identifiers

DOI

10.1038/SREP11153

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

17 February 2020

1048678028

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

PubMed publication ID

26084520

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26084520%20AND%20SRC:MED&resulttype=core&format=json