(Q28269966)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

ORegAnno 3.0: a community-driven resource for curated regulatory annotation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

0 references

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Obi Griffith

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

4

Malachi Griffith

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

5

Katayoon Kasaian

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Robert Lesurf

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Kelsy C Cotto

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Grace Wang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Stephen B Montgomery

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Open Regulatory Annotation Consortium

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

language of work or name

English

0 references

publication date

17 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

issue

D1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

D126-32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

29 February 2020

copyright license

start time

15 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Is junk DNA bunk? A critique of ENCODE

20 March 2017

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On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE

20 March 2017

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20 March 2017

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20 March 2017

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REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

20 March 2017

1 reference

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Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data

20 March 2017

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ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species

20 March 2017

1 reference

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ORegAnno: an open-access community-driven resource for regulatory annotation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

VISTA Enhancer Browser--a database of tissue-specific human enhancers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Telomere shortening and apoptosis in telomerase-inhibited human tumor cells

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

A genome-wide association study identifies susceptibility loci for Wilms tumor

20 March 2017

1 reference

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Highly recurrent TERT promoter mutations in human melanoma

20 March 2017

1 reference

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TERT promoter mutations in familial and sporadic melanoma

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

The mutational landscape of head and neck squamous cell carcinoma

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Genome Modeling System: A Knowledge Management Platform for Genomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Recurrent somatic mutations in regulatory regions of human cancer genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

The ensembl regulatory build

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy.

29 September 2017

1 reference

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The UCSC Genome Browser database: 2015 update

29 September 2017

1 reference

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GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes

29 September 2017

1 reference

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RANK- and c-Met-mediated signal network promotes prostate cancer metastatic colonization

29 September 2017

1 reference

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miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

29 September 2017

1 reference

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JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Frequency of TERT promoter mutations in human cancers

29 September 2017

1 reference

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GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications

29 September 2017

1 reference

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Punctuated evolution of prostate cancer genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

An integrative approach to inferring gene regulatory module networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

The NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Whole-genome cartography of estrogen receptor alpha binding sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Genome-wide analysis of noncoding regulatory mutations in cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702855

The ENCODE project: missteps overshadowing a success

2 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1203

LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1203

The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1203

Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1203

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV1203

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/LesurfCWGKJMGC16

29 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26578589%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

2 references