(Q30579774)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Alberto Santos-Zavaleta

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

Yalbi I Balderas-Martínez

19 February 2020

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Enrique Morett

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Julio Collado-Vides

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

César Bonavides-Martínez

17

object named as

César Bonavides-Martínez

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

3

Socorro Gama-Castro

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

author name string

Heladia Salgado

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Luis Muñiz-Rascado

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Jair S García-Sotelo

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Verena Weiss

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Hilda Solano-Lira

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Irma Martínez-Flores

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Alejandra Medina-Rivera

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Gerardo Salgado-Osorio

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Shirley Alquicira-Hernández

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Kevin Alquicira-Hernández

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Alejandra López-Fuentes

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Liliana Porrón-Sotelo

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Araceli M Huerta

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Lucia Pannier

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Maricela Olvera

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Aurora Labastida

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Verónica Jiménez-Jacinto

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Leticia Vega-Alvarado

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Victor Del Moral-Chávez

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Alfredo Hernández-Alvarez

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

language of work or name

English

0 references

publication date

29 November 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

volume

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

page(s)

D203-13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

19 February 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

20 June 2018

1 reference

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cis-antisense RNA, another level of gene regulation in bacteria.

20 June 2018

1 reference

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The PurR regulon in Escherichia coli K-12 MG1655.

20 June 2018

1 reference

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Pervasive regulation of nucleoid structure and function by nucleoid-associated proteins.

20 June 2018

1 reference

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EcoCyc: a comprehensive database of Escherichia coli biology

20 June 2018

1 reference

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

20 June 2018

1 reference

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Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

20 June 2018

1 reference

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Theoretical and empirical quality assessment of transcription factor-binding motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Tackling the widespread and critical impact of batch effects in high-throughput data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Bacterial antisense RNAs: how many are there, and what are they doing?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

The primary transcriptome of the major human pathogen Helicobacter pylori

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Using the Generic Genome Browser (GBrowse).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Transcription from bacteriophage lambda pR promoter is regulated independently and antagonistically by DksA and ppGpp

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

ChIP-seq: advantages and challenges of a maturing technology

20 June 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Bioinformatics resources for the study of gene regulation in bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus

20 June 2018

1 reference

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Modulation of CRP-dependent transcription at the Escherichia coli acsP2 promoter by nucleoprotein complexes: anti-activation by the nucleoid proteins FIS and IHF.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

The generic genome browser: a building block for a model organism system database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Transcription activation at the Escherichia coli melAB promoter: the role of MelR and the cyclic AMP receptor protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Transcription activation at promoters carrying tandem DNA sites for the Escherichia coli cyclic AMP receptor protein: organisation of the RNA polymerase alpha subunits

20 June 2018

1 reference

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Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Towards a unified grammatical model of sigma 70 and sigma 54 bacterial promoters.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Evidence for a novel glycinamide ribonucleotide transformylase in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Pore-forming activity of the Tsx protein from the outer membrane of Escherichia coli. Demonstration of a nucleoside-specific binding site.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Helical phase dependent action of CRP: effect of the distance between the CRP site and the -35 region on promoter activity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Control site location and transcriptional regulation in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Characterization of the Escherichia coli codBA operon encoding cytosine permease and cytosine deaminase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531196

Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription factor DksA from Escherichia coli.

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

RSAT 2011: regulatory sequence analysis tools.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Antisense transcription is pervasive but rarely conserved in enteric bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Choosing BLAST options for better detection of orthologs as reciprocal best hits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Cloning and functional characterization of two bacterial members of the NAT/NCS2 family in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Positional Conservation of Clusters of Overlapping Promoter-Like Sequences in Enterobacterial Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1201

Regulation of codBA operon expression in Escherichia coli by UTP-dependent reiterative transcription and UTP-sensitive transcriptional start site switching

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23203884

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS1201

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13

19 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23203884%20AND%20SRC:MED&resulttype=core&format=json