(Q33511247)

27 July 2017

title

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli (English)

1 reference

27 July 2017

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Blanca Taboada

6

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Enrique Morett

object named as

Enrique Morett

13

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Bruno Contreras-Moreira

object named as

Bruno Contreras-Moreira

10

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Julio Collado-Vides

object named as

Julio Collado-Vides

12

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author name string

Alfredo Mendoza-Vargas

1

1 reference

27 July 2017

Leticia Olvera

2

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27 July 2017

Maricela Olvera

3

1 reference

27 July 2017

Ricardo Grande

4

1 reference

27 July 2017

Leticia Vega-Alvarado

5

1 reference

27 July 2017

Verónica Jimenez-Jacinto

7

1 reference

27 July 2017

Heladia Salgado

8

1 reference

27 July 2017

Katy Juárez

9

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27 July 2017

Araceli M Huerta

11

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27 July 2017

language of work or name

English

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publication date

19 October 2009

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27 July 2017

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27 July 2017

volume

4

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27 July 2017

issue

10

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27 July 2017

page(s)

e7526

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Creative Commons Attribution 4.0 International

27 July 2017

copyright license

start time

19 October 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

21 June 2018

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Stochasticity and cell fate

21 June 2018

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

21 June 2018

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High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Anatomy of Escherichia coli sigma70 promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes

21 June 2018

1 reference

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RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

21 June 2018

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Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays

21 June 2018

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Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

A novel method for prokaryotic promoter prediction based on DNA stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Engineered riboregulators enable post-transcriptional control of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Identification and analysis of 'extended -10' promoters in Escherichia coli.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Using the transcriptome to annotate the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

21 June 2018

1 reference

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

21 June 2018

1 reference

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The biology of eukaryotic promoter prediction--a review

21 June 2018

1 reference

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The functional and regulatory roles of sigma factors in transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

RegulonDB: a database on transcriptional regulation in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Non-canonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Eukaryotic promoter recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Compilation of E. coli mRNA promoter sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Serial analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Compilation and analysis ofEscherichia colipromoter DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Factor Stimulating Transcription by RNA Polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Analysis of E. coli promoter sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Nucleotide sequence of putC, the regulatory region for the put regulon of Escherichia coli K12.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

DNA sequences of the cysK regions of Salmonella typhimurium and Escherichia coli and linkage of the cysK regions to ptsH.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Characterization of the structural genes for the DNA-binding protein H-NS in Enterobacteriaceae.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Interaction of RNA Polymerase with Promoters from Bacteriophage fd

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Characterization of the 5'-terminal structure of simian virus 40 early mRNA's

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2760140

Expression profiling using a hexamer-based universal microarray

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007526

Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007526

Synthesis of the Escherichia coli K-12 nucleoid-associated DNA-binding protein H-NS is subjected to growth-phase control and autoregulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007526

Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007526

Cyclic Re-use of the RNA Polymerase Sigma Factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007526

Transcription attenuation: a highly conserved regulatory strategy used by bacteria

21 January 2018

1 reference

12 December 2020

Differential promoter usage of infA in response to cold shock in Escherichia coli

1 reference

12 December 2020

Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli

1 reference

12 December 2020

Conserved regulatory motifs in bacteria: riboswitches and beyond

1 reference

12 December 2020

Characterisation of the promoters for the ompA gene which encodes a major outer membrane protein of Escherichia coli

1 reference

12 December 2020

Differentially expressed trmD ribosomal protein operon of Escherichia coli is transcribed as a single polycistronic mRNA species

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0007526

Identifiers

DOI

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27 July 2017

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27 July 2017

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