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The glmS ribozyme cofactor is a general acid-base catalyst
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scholarly article
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stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
title
The glmS ribozyme cofactor is a general acid-base catalyst
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
main subject
catalysis
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ribozyme
0 references
author
Júlia Viladoms
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
author name string
Martha J Fedor
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
language of work or name
English
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publication date
9 November 2012
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
published in
Journal of the American Chemical Society
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
volume
134
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
issue
46
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
page(s)
19043-19049
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
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11 June 2022
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3504194/fullTextXML
based on heuristic
inferred from PubMed Central ID database lookup
cites work
Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Riboswitch effectors as protein enzyme cofactors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Mechanism of mRNA destabilization by the glmS ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Requirement of Helix P2.2 and Nucleotide G1 for Positioning the Cleavage Site and Cofactor of the glmS Ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Control of gene expression by a natural metabolite-responsive ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Ribonuclease A
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Recent advances in the elucidation of the mechanisms of action of ribozymes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
20 March 2017
Characterization of the reaction path and transition states for RNA transphosphorylation models from theory and experiment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
An active-site guanine participates in glmS ribozyme catalysis in its protonated state
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
The glmS ribozyme tunes the catalytically critical pK(a) of its coenzyme glucosamine-6-phosphate
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
The pH dependence of hairpin ribozyme catalysis reflects ionization of an active site adenine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Deciphering the role of glucosamine-6-phosphate in the riboswitch action of glmS ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Chemical rescue, multiple ionizable groups, and general acid-base catalysis in the HDV genomic ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
A pseudoknot in the 3' non-core region of the glmS ribozyme enhances self-cleavage activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Chemical models for ribozyme action
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Ribozyme speed limits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Binding Energy, Specificity, and Enzymic Catalysis: The Circe Effect
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
29 September 2017
Rapid steps in the glmS ribozyme catalytic pathway: cation and ligand requirements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
2 June 2018
Value of general Acid-base catalysis to ribonuclease a.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
2 June 2018
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
2 June 2018
Direct Brønsted analysis of the restoration of activity to a mutant enzyme by exogenous amines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
2 June 2018
glmS Riboswitch binding to the glucosamine-6-phosphate α-anomer shifts the pKa toward neutrality
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
27 November 2018
A rate-limiting conformational step in the catalytic pathway of the glmS ribozyme.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
27 November 2018
Probing general acid catalysis in the hammerhead ribozyme.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
27 November 2018
Characteristics of ligand recognition by a glmS self-cleaving ribozyme.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
27 November 2018
General acid catalysis by the hepatitis delta virus ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
27 November 2018
Ligand requirements for glmS ribozyme self-cleavage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504194
retrieved
27 November 2018
Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23113700
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23113700
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Carba-sugars activate the glmS-riboswitch of Staphylococcus aureus
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23113700
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The Hydrolysis of RNA: From Theoretical Calculations to the Hammerhead Ribozyme-Mediated Cleavage of RNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23113700
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1021/JA307021F
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
PMCID
3504194
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
PubMed ID
23113700
1 reference
stated in
Europe PubMed Central
PMCID
3504194
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23113700%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
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