(Q33977896)

30 July 2017

title

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme (English)

1 reference

30 July 2017

0 references

Timothy J Wilson

1

1 reference

30 July 2017

Nan-Sheng Li

2

1 reference

30 July 2017

Jun Lu

3

1 reference

30 July 2017

John K Frederiksen

4

1 reference

30 July 2017

Joseph A Piccirilli

5

1 reference

30 July 2017

David M J Lilley

6

1 reference

30 July 2017

language of work or name

English

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publication date

14 June 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

1 reference

30 July 2017

volume

107

1 reference

30 July 2017

issue

26

1 reference

30 July 2017

page(s)

11751-11756

1 reference

The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

A guanine nucleobase important for catalysis by the VS ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Nucleobase catalysis in the hairpin ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Role of an active site adenine in hairpin ribozyme catalysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Transition state stabilization by a catalytic RNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Rescue of an abasic hairpin ribozyme by cationic nucleobases: evidence for a novel mechanism of RNA catalysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Functional involvement of G8 in the hairpin ribozyme cleavage mechanism

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Solution structure of the loop B domain from the hairpin ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Crystal structure of a hepatitis delta virus ribozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

The structure of cytidilyl(2′,5′)adenosine when bound to pancreatic ribonuclease S

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2900685

Role of an active site guanine in hairpin ribozyme catalysis probed by exogenous nucleobase rescue

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

The A730 loop is an important component of the active site of the VS ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Functional group requirements in the probable active site of the VS ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Nucleobase participation in ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

The complete VS ribozyme in solution studied by small-angle X-ray scattering

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

A conformational switch controls hepatitis delta virus ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

General acid catalysis by the hepatitis delta virus ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Ligand requirements for glmS ribozyme self-cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Structural Determinants of Enzymic Processivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004255107

Identification of the catalytic subdomain of the VS ribozyme and evidence for remarkable sequence tolerance in the active site loop

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20547881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20547881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1004255107

1 reference

release_5ujmpmclunc73bzs5lr5wqngzm

30 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5ujmpmclunc73bzs5lr5wqngzm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2900685

1 reference

30 July 2017

1 reference