(Q36250247)

13 August 2017

Characterization of the reaction path and transition states for RNA transphosphorylation models from theory and experiment (English)

1 reference

13 August 2017

6

Darrin M York

1 reference

13 August 2017

Kin-Yiu Wong

1

0 references

author name string

Hong Gu

2

1 reference

13 August 2017

Shuming Zhang

3

1 reference

13 August 2017

Joseph A Piccirilli

4

1 reference

13 August 2017

Michael E Harris

5

1 reference

13 August 2017

language of work or name

English

0 references

publication date

11 November 2011

1 reference

13 August 2017

5

1 reference

Angewandte Chemie International Edition

inferred from page(s)

published in

0 references

volume

51

1 reference

13 August 2017

3

1 reference

13 August 2017

647-651

1 reference

Active participation of Mg ion in the reaction coordinate of RNA self-cleavage catalyzed by the hammerhead ribozyme

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Small self-cleaving ribozymes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Theoretical analysis of kinetic isotope effects on proton transfer reactions between substituted alpha-methoxystyrenes and substituted acetic acids

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

A Systematic Approach for Computing Zero-Point Energy, Quantum Partition Function, and Tunneling Effect Based on Kleinert's Variational Perturbation Theory

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

CHARMM: the biomolecular simulation program

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

QM/MM methods for biomolecular systems

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

RNA catalysis: ribozymes, ribosomes, and riboswitches

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Advances in methods and algorithms in a modern quantum chemistry program package.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Biomolecular modeling: Goals, problems, perspectives

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Isotope effects in the study of phosphoryl and sulfuryl transfer reactions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Why nature chose phosphates

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

The effects of sulfur substitution for the nucleophile and bridging oxygen atoms in reactions of hydroxyalkyl phosphate esters

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Kinetic Isotope Effects for RNA Cleavage by 2′-O- Transphosphorylation: Nucleophilic Activation by Specific Base

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

An automated integration-free path-integral method based on Kleinert's variational perturbation theory

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

High-accuracy computation of reaction barriers in enzymes.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

General acid catalysis by the hepatitis delta virus ribozyme

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Hydrolysis of phosphotriesters: determination of transition states in parallel reactions by heavy-atom isotope effects

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3448066

Deprotonation Mechanism of NH4+ in theEscherichia coli Ammonium Transporter AmtB: Insight from QM and QM/MM Calculations

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FANIE.201104147

New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FANIE.201104147

QM/MM-Methoden für biomolekulare Systeme

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FANIE.201104147

21 January 2018

1 reference

12 December 2020

Transesterification thio effects of phosphate diesters: free energy barriers and kinetic and equilibrium isotope effects from density-functional theory

1 reference

12 December 2020

Synthesis and Properties of Diuridine Phosphate Analogues Containing Thio and Amino Modifications

1 reference

12 December 2020

Density functional study of the in-line mechanism of methanolysis of cyclic phosphate and thiophosphate esters in solution: insight into thio effects in RNA transesterification

1 reference

12 December 2020

Pseudorotation barriers of biological oxyphosphoranes: a challenge for simulations of ribozyme catalysis

1 reference

12 December 2020

Identifiers

DOI

10.1002/ANIE.201104147

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

22076983

1 reference