(Q28749189)

10.1101/CSHPERSPECT.A003574

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13 July 2024

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Adrian R Ferré-D'Amaré

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Adrian R. Ferré-D'Amaré

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13 July 2024

William G. Scott

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October 2010

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15 September 2010

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13 July 2024

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https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20843979/pdf/?tool=EBI

13 July 2024

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https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20843979/?tool=EBI

13 July 2024

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https://europepmc.org/articles/PMC2944367

13 July 2024

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20843979

https://doi.org/10.1101/cshperspect.a003574

13 July 2024

online access status

open access

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20843979

https://syndication.highwire.org/content/doi/10.1101/cshperspect.a003574

13 July 2024

1 reference

10.1101/CSHPERSPECT.A003574

Crossref

DOI

https://api.crossref.org/works/10.1101/CSHPERSPECT.A003574

Cold Spring Harbor Perspectives in Biology

13 July 2024

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volume

2

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issue

10

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page(s)

a003574

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cites work

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A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene

16 March 2017

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16 March 2017

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Tertiary contacts distant from the active site prime a ribozyme for catalysis

16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

16 March 2017

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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

16 March 2017

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Transition state stabilization by a catalytic RNA

16 March 2017

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In vitro evolution suggests multiple origins for the hammerhead ribozyme

16 March 2017

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Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

16 March 2017

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16 March 2017

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The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

16 March 2017

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Crystal structure of a hepatitis delta virus ribozyme

16 March 2017

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Schistosome satellite DNA encodes active hammerhead ribozymes

16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

16 March 2017

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16 March 2017

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16 March 2017

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3 June 2018

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3 June 2018

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Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme

3 June 2018

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The Neurospora Varkud satellite ribozyme

3 June 2018

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Rescue of an abasic hairpin ribozyme by cationic nucleobases: evidence for a novel mechanism of RNA catalysis

3 June 2018

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An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5'- and 3'-termini

3 June 2018

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Biophysical and biochemical investigations of RNA catalysis in the hammerhead ribozyme

3 June 2018

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Is counterion delocalization responsible for collapse in RNA folding?

3 June 2018

1 reference

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Distribution of hammerhead and hammerhead-like RNA motifs through the GenBank.

3 June 2018

1 reference

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In vitro selection of functional nucleic acids

3 June 2018

1 reference

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General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme

3 June 2018

1 reference

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Tertiary structure stabilization promotes hairpin ribozyme ligation

3 June 2018

1 reference

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Crystallographic structures of the hammerhead ribozyme: relationship to ribozyme folding and catalysis

3 June 2018

1 reference

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Metal ions play a passive role in the hairpin ribozyme catalysed reaction

3 June 2018

1 reference

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The loop B domain is physically separable from the loop A domain in the hairpin ribozyme

3 June 2018

1 reference

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Ribozymes: a distinct class of metalloenzymes

3 June 2018

1 reference

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Protein Structure, Ribonuclease-S and Nucleotide Interactions

3 June 2018

1 reference

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Sequences required for self-catalysed cleavage of the satellite RNA of tobacco ringspot virus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Alternative modes of self-cleavage by newt satellite 2 transcripts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Pseudoknots: a new motif in the RNA game

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Structural domains of transfer RNA molecules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Sequence requirements of the hammerhead RNA self-cleavage reaction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

General acid catalysis by the hepatitis delta virus ribozyme

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944367

A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage

27 November 2018

1 reference

12 December 2020

Internal equilibrium of the hammerhead ribozyme is altered by the length of certain covalent cross-links

1 reference

12 December 2020

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

1 reference

12 December 2020

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

12 December 2020

A small catalytic oligoribonucleotide

1 reference

12 December 2020

10.1101/CSHPERSPECT.A003574

Identifiers

DOI

1 reference

1 reference

1 reference

1 reference