(Q43256741)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

0 references

5

1 reference

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17 January 2020

Mark Lee

3

1 reference

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17 January 2020

author name string

Adam Roth

1

1 reference

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17 January 2020

Ali Nahvi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Inbal Jona

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

language of work or name

English

0 references

publication date

16 February 2006

1 reference

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17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

volume

12

1 reference

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17 January 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

page(s)

607-619

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

17 January 2020

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1421096/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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1 reference

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25 May 2018

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Role of an active site adenine in hairpin ribozyme catalysis

25 May 2018

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Metal ions and RNA folding: a highly charged topic with a dynamic future

25 May 2018

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Riboswitches exert genetic control through metabolite-induced conformational change

25 May 2018

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25 May 2018

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25 May 2018

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Control of gene expression by a natural metabolite-responsive ribozyme

25 May 2018

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A guide to ions and RNA structure

25 May 2018

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25 May 2018

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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

25 May 2018

1 reference

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A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

25 May 2018

1 reference

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A common speed limit for RNA-cleaving ribozymes and deoxyribozymes

25 May 2018

1 reference

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25 May 2018

Ribozyme speed limits

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Metal ion binding to catalytic RNA molecules

25 May 2018

1 reference

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Ionization of a Critical Adenosine Residue in theNeurosporaVarkud Satellite Ribozyme Active Site†

25 May 2018

1 reference

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Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Metal ions in the structure and function of RNA.

25 May 2018

1 reference

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mRNA decay in Escherichia coli comes of age.

25 May 2018

1 reference

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The role of metal ions in RNA catalysis

25 May 2018

1 reference

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25 May 2018

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The hammerhead cleavage reaction in monovalent cations

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations.

25 May 2018

1 reference

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Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR.

25 May 2018

1 reference

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Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

25 May 2018

1 reference

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A universal mode of helix packing in RNA.

25 May 2018

1 reference

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The folding of the hairpin ribozyme: dependence on the loops and the junction

25 May 2018

1 reference

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Metal ions in ribozyme folding and catalysis

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

The P5abc peripheral element facilitates preorganization of the tetrahymena group I ribozyme for catalysis

25 May 2018

1 reference

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General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme

25 May 2018

1 reference

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The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Crystal structure of a hepatitis delta virus ribozyme

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Metal ions play a passive role in the hairpin ribozyme catalysed reaction

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Stability constants of magnesium and cadmium complexes of adenine nucleotides and thionucleotides and rate constants for formation and dissociation of magnesium-ATP and magnesium-ADP

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Role of divalent metal ions in the hammerhead RNA cleavage reaction

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Regulation of cell magnesium

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Diastereomers of the nucleoside phosphorothioates as probes of the structure of the metal nucleotide substrates and of the nucleotide binding site of yeast hexokinase

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Diastereomers of 5'-O-adenosyl 3'-O-uridyl phosphorothioate: chemical synthesis and enzymic properties

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

General acid catalysis by the hepatitis delta virus ribozyme

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Ligand requirements for glmS ribozyme self-cleavage

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Functional group requirements in the probable active site of the VS ribozyme

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421096

Hammerhead cleavage of the phosphorodithioate linkage

15 August 2018

1 reference

12 December 2020

Ribozymes--a snip too far?

1 reference

12 December 2020

Ionic requirements for RNA binding, cleavage, and ligation by the hairpin ribozyme

1 reference

12 December 2020

Metallobiochemistry of RNA. Co(NH3)6(3+) as a probe for Mg2+(aq) binding sites

1 reference

12 December 2020

Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA

1 reference

12 December 2020

A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage

1 reference

12 December 2020

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

1 reference

12 December 2020

Assembly of an exceptionally stable RNA tertiary interface in a group I ribozyme

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2266506

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16484375%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

16484375

1 reference